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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION IRISH SCORE GEO SAMPLE DGF STATUS DIAGNOSIS GOOD,BAD KDRI DONOR AGE MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION
GSM928892 not specified not specified nephrectomy not specified not specified GSM880500 nephrectomy nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified not specified GSM880447 nephrectomy nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified not specified GSM880430 nephrectomy nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified not specified GSM880318 nephrectomy nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified not specified GSM880311 nephrectomy nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified not specified GSM880299 nephrectomy nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified not specified GSM880246 nephrectomy nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified not specified GSM880245 nephrectomy nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 9 not specified IGF good 0.999 13 2
GSM928883 3.03 0.804 renal allograft biopsy 0 16 not specified IGF good 1.281 55 0
GSM928882 18.18 1.135 renal allograft biopsy not specified 41 not specified IGF bad 2.032 68 not specified
GSM92888 not specified 1.066 renal allograft biopsy 4 43 not specified DGF bad 1.528 52 4
GSM928880 2.56 0.495 renal allograft biopsy 0 16 not specified IGF good 0.779 17 0
GSM928879 not specified 0.745 renal allograft biopsy not specified 23 not specified IGF good 1.116 39 not specified
GSM928878 8.33 0.451 renal allograft biopsy 4 11 not specified IGF good 0.85 26 4
GSM928877 3.03 0.765 renal allograft biopsy 0 22 not specified IGF good 1.267 55 0
GSM928876 0 1.009 renal allograft biopsy 4 19 not specified IGF good 1.187 53 4
GSM928875 0 0.678 renal allograft biopsy 7 6 not specified IGF good 0.97 19 7
GSM928874 0 0.644 renal allograft biopsy 7 13 not specified IGF good 0.681 18 7
GSM928873 not specified 0.922 renal allograft biopsy not specified 40 not specified DGF bad 1.668 50 not specified
GSM928872 4.35 0.873 renal allograft biopsy 3 22 not specified DGF bad 1.362 52 3
GSM92887 0 0.426 renal allograft biopsy not specified 8 not specified IGF good 0.756 17 not specified
GSM928870 16.67 0.941 renal allograft biopsy 2 22 not specified DGF bad 1.546 63 2
GSM928869 0 0.57 renal allograft biopsy 4 7 not specified IGF good 0.952 22 4
GSM928868 0 0.881 renal allograft biopsy 3 8 not specified IGF bad 1.143 39 3
GSM928867 50 1.127 renal allograft biopsy not specified 36 not specified IGF good 1.639 65 not specified
GSM928866 0 0.495 renal allograft biopsy 0 12 not specified IGF good 0.818 16 0
GSM928865 0 0.678 renal allograft biopsy 4 14 not specified IGF good 0.93 25 4
GSM928864 not specified 0.901 renal allograft biopsy 4 21 not specified IGF good 1.426 54 4
GSM928863 0 0.804 renal allograft biopsy 7 19 not specified IGF good 2.174 4 7
GSM928862 0 0.737 renal allograft biopsy 3 29 not specified DGF bad 1.176 54 3
GSM92886 4 0.803 renal allograft biopsy 4 15 not specified IGF good 1.191 52 4
GSM928860 3.08 1.022 renal allograft biopsy 0 11 not specified IGF good 1.291 53 0
GSM928859 25 1.011 renal allograft biopsy 6 25 not specified IGF good 1.543 58 6
GSM928858 0 0.786 renal allograft biopsy 0 27 not specified IGF good 1.302 43 0
GSM928857 6.4 1.307 renal allograft biopsy 7 31 not specified IGF good 1.743 69 7
GSM928856 0 0.873 renal allograft biopsy 4 31 not specified IGF good 1.562 59 4
GSM928855 0 0.791 renal allograft biopsy 4 36 not specified IGF good 1.392 34 4
GSM928854 6.4 1.354 renal allograft biopsy 4 36 not specified IGF good 2.108 69 4
GSM928853 12.5 0.583 renal allograft biopsy 7 46 not specified IGF good 1.16 48 7
GSM928852 0 0.85 renal allograft biopsy 4 20 not specified IGF good 1.311 42 4
GSM92885 25 0.873 renal allograft biopsy 9 34 not specified IGF good 2.675 50 9
GSM928850 0 0.589 renal allograft biopsy 0 11 not specified IGF good 1.002 28 0
GSM928849 11.11 0.747 renal allograft biopsy 0 23 not specified IGF good 1.147 33 0
GSM928848 16 1.221 renal allograft biopsy 6 35 not specified DGF bad 3.991 70 6
GSM928847 0 0.382 renal allograft biopsy 4 9 not specified DGF bad 1.037 13 4
GSM928846 0 0.426 renal allograft biopsy 0 18 not specified IGF good 0.79 19 0
GSM928845 0 0.804 renal allograft biopsy 4 11 not specified IGF good 1.14 53 4
GSM928844 not specified 0.917 renal allograft biopsy not specified 21 not specified IGF good 1.464 59 not specified
GSM928843 3.33 0.786 renal allograft biopsy 0 22 not specified IGF good 1.097 43 0
GSM928842 0 0.855 renal allograft biopsy 0 17 not specified DGF bad 0.981 43 0
GSM92884 16.67 0.431 renal allograft biopsy 2 15 not specified IGF good 1.007 46 2
GSM928840 0 0.722 renal allograft biopsy not specified 22 not specified IGF good 0.755 18 not specified
GSM928839 not specified 1.086 renal allograft biopsy 0 21 not specified DGF bad 1.752 66 0
GSM928838 0 0.722 renal allograft biopsy 4 17 not specified IGF good 1 19 4
GSM928837 12.5 0.765 renal allograft biopsy not specified 21 not specified IGF good 1.164 54 not specified
GSM928836 0 0.719 renal allograft biopsy 0 16 not specified IGF good 1.191 43 0
GSM928835 27.27 0.631 renal allograft biopsy 6 18 not specified IGF good 0.812 23 6
GSM928834 0 1.127 renal allograft biopsy 4 14 not specified DGF bad 1.594 65 4
GSM928833 8.33 0.687 renal allograft biopsy 0 28 not specified DGF bad 0.998 52 0
GSM928832 15.79 0.946 renal allograft biopsy 6 14 not specified IGF good 1.243 43 6
GSM92883 0 0.855 renal allograft biopsy 0 13 not specified IGF bad 1.111 47 0
GSM928830 11.11 0.719 renal allograft biopsy 3 39 not specified IGF good 1.167 43 3
GSM928829 18.18 0.92 renal allograft biopsy not specified 39 not specified IGF good 1.442 52 not specified
GSM928828 7.14 0.533 renal allograft biopsy 4 18 not specified IGF good 0.968 46 4
GSM928827 0 0.94 renal allograft biopsy 3 11 not specified IGF bad 1.194 51 3
GSM928826 0 1.1 renal allograft biopsy 0 18 not specified IGF good 1.497 56 0
GSM928825 14.29 0.806 renal allograft biopsy 0 25 not specified IGF good 1.265 55 0
GSM928824 17.74 1.236 renal allograft biopsy 6 29 not specified IGF good 1.711 52 6
GSM928823 0 0.587 renal allograft biopsy 0 8 not specified IGF good 0.765 17 0
GSM928822 9.09 0.694 renal allograft biopsy 4 14 not specified IGF good 1.342 43 4
GSM92882 0 0.384 renal allograft biopsy 3 9 not specified IGF good 0.679 17 3
GSM928820 0 0.495 renal allograft biopsy 4 11 not specified IGF good 0.867 16 4
GSM928819 0 0.451 renal allograft biopsy 3 13 not specified IGF good 0.758 23 3
GSM928818 0 0.6 renal allograft biopsy 0 11 not specified IGF good 0.84 22 0
GSM928817 0 1.144 renal allograft biopsy not specified 30 not specified DGF bad 1.524 51 not specified
GSM928816 0 1.144 renal allograft biopsy not specified 33 not specified IGF bad 1.516 53 not specified
GSM928815 not specified 0.806 renal allograft biopsy not specified 19 not specified IGF good 1.351 59 not specified

Tags

  • glomerulosclerosis
  • kidney
  • serum

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