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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION IRISH SCORE GEO SAMPLE DIAGNOSIS GOOD,BAD DGF STATUS MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE KDRI
GSM928892 not specified not specified nephrectomy not specified not specified GSM880500 nephrectomy nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified not specified GSM880447 nephrectomy nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified not specified GSM880430 nephrectomy nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified not specified GSM880318 nephrectomy nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified not specified GSM880311 nephrectomy nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified not specified GSM880299 nephrectomy nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified not specified GSM880246 nephrectomy nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified not specified GSM880245 nephrectomy nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 9 not specified good IGF 2 13 0.999
GSM928883 3.03 0.804 renal allograft biopsy 0 16 not specified good IGF 0 55 1.281
GSM928882 18.18 1.135 renal allograft biopsy not specified 41 not specified bad IGF not specified 68 2.032
GSM92888 not specified 1.066 renal allograft biopsy 4 43 not specified bad DGF 4 52 1.528
GSM928880 2.56 0.495 renal allograft biopsy 0 16 not specified good IGF 0 17 0.779
GSM928879 not specified 0.745 renal allograft biopsy not specified 23 not specified good IGF not specified 39 1.116
GSM928878 8.33 0.451 renal allograft biopsy 4 11 not specified good IGF 4 26 0.85
GSM928877 3.03 0.765 renal allograft biopsy 0 22 not specified good IGF 0 55 1.267
GSM928876 0 1.009 renal allograft biopsy 4 19 not specified good IGF 4 53 1.187
GSM928875 0 0.678 renal allograft biopsy 7 6 not specified good IGF 7 19 0.97
GSM928874 0 0.644 renal allograft biopsy 7 13 not specified good IGF 7 18 0.681
GSM928873 not specified 0.922 renal allograft biopsy not specified 40 not specified bad DGF not specified 50 1.668
GSM928872 4.35 0.873 renal allograft biopsy 3 22 not specified bad DGF 3 52 1.362
GSM92887 0 0.426 renal allograft biopsy not specified 8 not specified good IGF not specified 17 0.756
GSM928870 16.67 0.941 renal allograft biopsy 2 22 not specified bad DGF 2 63 1.546
GSM928869 0 0.57 renal allograft biopsy 4 7 not specified good IGF 4 22 0.952
GSM928868 0 0.881 renal allograft biopsy 3 8 not specified bad IGF 3 39 1.143
GSM928867 50 1.127 renal allograft biopsy not specified 36 not specified good IGF not specified 65 1.639
GSM928866 0 0.495 renal allograft biopsy 0 12 not specified good IGF 0 16 0.818
GSM928865 0 0.678 renal allograft biopsy 4 14 not specified good IGF 4 25 0.93
GSM928864 not specified 0.901 renal allograft biopsy 4 21 not specified good IGF 4 54 1.426
GSM928863 0 0.804 renal allograft biopsy 7 19 not specified good IGF 7 4 2.174
GSM928862 0 0.737 renal allograft biopsy 3 29 not specified bad DGF 3 54 1.176
GSM92886 4 0.803 renal allograft biopsy 4 15 not specified good IGF 4 52 1.191
GSM928860 3.08 1.022 renal allograft biopsy 0 11 not specified good IGF 0 53 1.291
GSM928859 25 1.011 renal allograft biopsy 6 25 not specified good IGF 6 58 1.543
GSM928858 0 0.786 renal allograft biopsy 0 27 not specified good IGF 0 43 1.302
GSM928857 6.4 1.307 renal allograft biopsy 7 31 not specified good IGF 7 69 1.743
GSM928856 0 0.873 renal allograft biopsy 4 31 not specified good IGF 4 59 1.562
GSM928855 0 0.791 renal allograft biopsy 4 36 not specified good IGF 4 34 1.392
GSM928854 6.4 1.354 renal allograft biopsy 4 36 not specified good IGF 4 69 2.108
GSM928853 12.5 0.583 renal allograft biopsy 7 46 not specified good IGF 7 48 1.16
GSM928852 0 0.85 renal allograft biopsy 4 20 not specified good IGF 4 42 1.311
GSM92885 25 0.873 renal allograft biopsy 9 34 not specified good IGF 9 50 2.675
GSM928850 0 0.589 renal allograft biopsy 0 11 not specified good IGF 0 28 1.002
GSM928849 11.11 0.747 renal allograft biopsy 0 23 not specified good IGF 0 33 1.147
GSM928848 16 1.221 renal allograft biopsy 6 35 not specified bad DGF 6 70 3.991
GSM928847 0 0.382 renal allograft biopsy 4 9 not specified bad DGF 4 13 1.037
GSM928846 0 0.426 renal allograft biopsy 0 18 not specified good IGF 0 19 0.79
GSM928845 0 0.804 renal allograft biopsy 4 11 not specified good IGF 4 53 1.14
GSM928844 not specified 0.917 renal allograft biopsy not specified 21 not specified good IGF not specified 59 1.464
GSM928843 3.33 0.786 renal allograft biopsy 0 22 not specified good IGF 0 43 1.097
GSM928842 0 0.855 renal allograft biopsy 0 17 not specified bad DGF 0 43 0.981
GSM92884 16.67 0.431 renal allograft biopsy 2 15 not specified good IGF 2 46 1.007
GSM928840 0 0.722 renal allograft biopsy not specified 22 not specified good IGF not specified 18 0.755
GSM928839 not specified 1.086 renal allograft biopsy 0 21 not specified bad DGF 0 66 1.752
GSM928838 0 0.722 renal allograft biopsy 4 17 not specified good IGF 4 19 1
GSM928837 12.5 0.765 renal allograft biopsy not specified 21 not specified good IGF not specified 54 1.164
GSM928836 0 0.719 renal allograft biopsy 0 16 not specified good IGF 0 43 1.191
GSM928835 27.27 0.631 renal allograft biopsy 6 18 not specified good IGF 6 23 0.812
GSM928834 0 1.127 renal allograft biopsy 4 14 not specified bad DGF 4 65 1.594
GSM928833 8.33 0.687 renal allograft biopsy 0 28 not specified bad DGF 0 52 0.998
GSM928832 15.79 0.946 renal allograft biopsy 6 14 not specified good IGF 6 43 1.243
GSM92883 0 0.855 renal allograft biopsy 0 13 not specified bad IGF 0 47 1.111
GSM928830 11.11 0.719 renal allograft biopsy 3 39 not specified good IGF 3 43 1.167
GSM928829 18.18 0.92 renal allograft biopsy not specified 39 not specified good IGF not specified 52 1.442
GSM928828 7.14 0.533 renal allograft biopsy 4 18 not specified good IGF 4 46 0.968
GSM928827 0 0.94 renal allograft biopsy 3 11 not specified bad IGF 3 51 1.194
GSM928826 0 1.1 renal allograft biopsy 0 18 not specified good IGF 0 56 1.497
GSM928825 14.29 0.806 renal allograft biopsy 0 25 not specified good IGF 0 55 1.265
GSM928824 17.74 1.236 renal allograft biopsy 6 29 not specified good IGF 6 52 1.711
GSM928823 0 0.587 renal allograft biopsy 0 8 not specified good IGF 0 17 0.765
GSM928822 9.09 0.694 renal allograft biopsy 4 14 not specified good IGF 4 43 1.342
GSM92882 0 0.384 renal allograft biopsy 3 9 not specified good IGF 3 17 0.679
GSM928820 0 0.495 renal allograft biopsy 4 11 not specified good IGF 4 16 0.867
GSM928819 0 0.451 renal allograft biopsy 3 13 not specified good IGF 3 23 0.758
GSM928818 0 0.6 renal allograft biopsy 0 11 not specified good IGF 0 22 0.84
GSM928817 0 1.144 renal allograft biopsy not specified 30 not specified bad DGF not specified 51 1.524
GSM928816 0 1.144 renal allograft biopsy not specified 33 not specified bad IGF not specified 53 1.516
GSM928815 not specified 0.806 renal allograft biopsy not specified 19 not specified good IGF not specified 59 1.351

Tags

  • glomerulosclerosis
  • kidney
  • serum

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