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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION GEO SAMPLE DGF STATUS KDRI DIAGNOSIS GOOD,BAD IRISH SCORE DONOR AGE MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION
GSM928892 not specified not specified nephrectomy not specified GSM880500 nephrectomy not specified nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified GSM880447 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified GSM880430 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified GSM880318 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified GSM880311 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified GSM880299 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified GSM880246 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified GSM880245 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 not specified IGF 0.999 good 9 13 2
GSM928883 3.03 0.804 renal allograft biopsy 0 not specified IGF 1.281 good 16 55 0
GSM928882 18.18 1.135 renal allograft biopsy not specified not specified IGF 2.032 bad 41 68 not specified
GSM92888 not specified 1.066 renal allograft biopsy 4 not specified DGF 1.528 bad 43 52 4
GSM928880 2.56 0.495 renal allograft biopsy 0 not specified IGF 0.779 good 16 17 0
GSM928879 not specified 0.745 renal allograft biopsy not specified not specified IGF 1.116 good 23 39 not specified
GSM928878 8.33 0.451 renal allograft biopsy 4 not specified IGF 0.85 good 11 26 4
GSM928877 3.03 0.765 renal allograft biopsy 0 not specified IGF 1.267 good 22 55 0
GSM928876 0 1.009 renal allograft biopsy 4 not specified IGF 1.187 good 19 53 4
GSM928875 0 0.678 renal allograft biopsy 7 not specified IGF 0.97 good 6 19 7
GSM928874 0 0.644 renal allograft biopsy 7 not specified IGF 0.681 good 13 18 7
GSM928873 not specified 0.922 renal allograft biopsy not specified not specified DGF 1.668 bad 40 50 not specified
GSM928872 4.35 0.873 renal allograft biopsy 3 not specified DGF 1.362 bad 22 52 3
GSM92887 0 0.426 renal allograft biopsy not specified not specified IGF 0.756 good 8 17 not specified
GSM928870 16.67 0.941 renal allograft biopsy 2 not specified DGF 1.546 bad 22 63 2
GSM928869 0 0.57 renal allograft biopsy 4 not specified IGF 0.952 good 7 22 4
GSM928868 0 0.881 renal allograft biopsy 3 not specified IGF 1.143 bad 8 39 3
GSM928867 50 1.127 renal allograft biopsy not specified not specified IGF 1.639 good 36 65 not specified
GSM928866 0 0.495 renal allograft biopsy 0 not specified IGF 0.818 good 12 16 0
GSM928865 0 0.678 renal allograft biopsy 4 not specified IGF 0.93 good 14 25 4
GSM928864 not specified 0.901 renal allograft biopsy 4 not specified IGF 1.426 good 21 54 4
GSM928863 0 0.804 renal allograft biopsy 7 not specified IGF 2.174 good 19 4 7
GSM928862 0 0.737 renal allograft biopsy 3 not specified DGF 1.176 bad 29 54 3
GSM92886 4 0.803 renal allograft biopsy 4 not specified IGF 1.191 good 15 52 4
GSM928860 3.08 1.022 renal allograft biopsy 0 not specified IGF 1.291 good 11 53 0
GSM928859 25 1.011 renal allograft biopsy 6 not specified IGF 1.543 good 25 58 6
GSM928858 0 0.786 renal allograft biopsy 0 not specified IGF 1.302 good 27 43 0
GSM928857 6.4 1.307 renal allograft biopsy 7 not specified IGF 1.743 good 31 69 7
GSM928856 0 0.873 renal allograft biopsy 4 not specified IGF 1.562 good 31 59 4
GSM928855 0 0.791 renal allograft biopsy 4 not specified IGF 1.392 good 36 34 4
GSM928854 6.4 1.354 renal allograft biopsy 4 not specified IGF 2.108 good 36 69 4
GSM928853 12.5 0.583 renal allograft biopsy 7 not specified IGF 1.16 good 46 48 7
GSM928852 0 0.85 renal allograft biopsy 4 not specified IGF 1.311 good 20 42 4
GSM92885 25 0.873 renal allograft biopsy 9 not specified IGF 2.675 good 34 50 9
GSM928850 0 0.589 renal allograft biopsy 0 not specified IGF 1.002 good 11 28 0
GSM928849 11.11 0.747 renal allograft biopsy 0 not specified IGF 1.147 good 23 33 0
GSM928848 16 1.221 renal allograft biopsy 6 not specified DGF 3.991 bad 35 70 6
GSM928847 0 0.382 renal allograft biopsy 4 not specified DGF 1.037 bad 9 13 4
GSM928846 0 0.426 renal allograft biopsy 0 not specified IGF 0.79 good 18 19 0
GSM928845 0 0.804 renal allograft biopsy 4 not specified IGF 1.14 good 11 53 4
GSM928844 not specified 0.917 renal allograft biopsy not specified not specified IGF 1.464 good 21 59 not specified
GSM928843 3.33 0.786 renal allograft biopsy 0 not specified IGF 1.097 good 22 43 0
GSM928842 0 0.855 renal allograft biopsy 0 not specified DGF 0.981 bad 17 43 0
GSM92884 16.67 0.431 renal allograft biopsy 2 not specified IGF 1.007 good 15 46 2
GSM928840 0 0.722 renal allograft biopsy not specified not specified IGF 0.755 good 22 18 not specified
GSM928839 not specified 1.086 renal allograft biopsy 0 not specified DGF 1.752 bad 21 66 0
GSM928838 0 0.722 renal allograft biopsy 4 not specified IGF 1 good 17 19 4
GSM928837 12.5 0.765 renal allograft biopsy not specified not specified IGF 1.164 good 21 54 not specified
GSM928836 0 0.719 renal allograft biopsy 0 not specified IGF 1.191 good 16 43 0
GSM928835 27.27 0.631 renal allograft biopsy 6 not specified IGF 0.812 good 18 23 6
GSM928834 0 1.127 renal allograft biopsy 4 not specified DGF 1.594 bad 14 65 4
GSM928833 8.33 0.687 renal allograft biopsy 0 not specified DGF 0.998 bad 28 52 0
GSM928832 15.79 0.946 renal allograft biopsy 6 not specified IGF 1.243 good 14 43 6
GSM92883 0 0.855 renal allograft biopsy 0 not specified IGF 1.111 bad 13 47 0
GSM928830 11.11 0.719 renal allograft biopsy 3 not specified IGF 1.167 good 39 43 3
GSM928829 18.18 0.92 renal allograft biopsy not specified not specified IGF 1.442 good 39 52 not specified
GSM928828 7.14 0.533 renal allograft biopsy 4 not specified IGF 0.968 good 18 46 4
GSM928827 0 0.94 renal allograft biopsy 3 not specified IGF 1.194 bad 11 51 3
GSM928826 0 1.1 renal allograft biopsy 0 not specified IGF 1.497 good 18 56 0
GSM928825 14.29 0.806 renal allograft biopsy 0 not specified IGF 1.265 good 25 55 0
GSM928824 17.74 1.236 renal allograft biopsy 6 not specified IGF 1.711 good 29 52 6
GSM928823 0 0.587 renal allograft biopsy 0 not specified IGF 0.765 good 8 17 0
GSM928822 9.09 0.694 renal allograft biopsy 4 not specified IGF 1.342 good 14 43 4
GSM92882 0 0.384 renal allograft biopsy 3 not specified IGF 0.679 good 9 17 3
GSM928820 0 0.495 renal allograft biopsy 4 not specified IGF 0.867 good 11 16 4
GSM928819 0 0.451 renal allograft biopsy 3 not specified IGF 0.758 good 13 23 3
GSM928818 0 0.6 renal allograft biopsy 0 not specified IGF 0.84 good 11 22 0
GSM928817 0 1.144 renal allograft biopsy not specified not specified DGF 1.524 bad 30 51 not specified
GSM928816 0 1.144 renal allograft biopsy not specified not specified IGF 1.516 bad 33 53 not specified
GSM928815 not specified 0.806 renal allograft biopsy not specified not specified IGF 1.351 good 19 59 not specified

Tags

  • glomerulosclerosis
  • kidney
  • serum

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