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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION GEO SAMPLE DGF STATUS KDRI DIAGNOSIS GOOD,BAD MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE IRISH SCORE
GSM928892 not specified not specified nephrectomy not specified GSM880500 nephrectomy not specified nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified GSM880447 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified GSM880430 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified GSM880318 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified GSM880311 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified GSM880299 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified GSM880246 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified GSM880245 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 not specified IGF 0.999 good 2 13 9
GSM928883 3.03 0.804 renal allograft biopsy 0 not specified IGF 1.281 good 0 55 16
GSM928882 18.18 1.135 renal allograft biopsy not specified not specified IGF 2.032 bad not specified 68 41
GSM92888 not specified 1.066 renal allograft biopsy 4 not specified DGF 1.528 bad 4 52 43
GSM928880 2.56 0.495 renal allograft biopsy 0 not specified IGF 0.779 good 0 17 16
GSM928879 not specified 0.745 renal allograft biopsy not specified not specified IGF 1.116 good not specified 39 23
GSM928878 8.33 0.451 renal allograft biopsy 4 not specified IGF 0.85 good 4 26 11
GSM928877 3.03 0.765 renal allograft biopsy 0 not specified IGF 1.267 good 0 55 22
GSM928876 0 1.009 renal allograft biopsy 4 not specified IGF 1.187 good 4 53 19
GSM928875 0 0.678 renal allograft biopsy 7 not specified IGF 0.97 good 7 19 6
GSM928874 0 0.644 renal allograft biopsy 7 not specified IGF 0.681 good 7 18 13
GSM928873 not specified 0.922 renal allograft biopsy not specified not specified DGF 1.668 bad not specified 50 40
GSM928872 4.35 0.873 renal allograft biopsy 3 not specified DGF 1.362 bad 3 52 22
GSM92887 0 0.426 renal allograft biopsy not specified not specified IGF 0.756 good not specified 17 8
GSM928870 16.67 0.941 renal allograft biopsy 2 not specified DGF 1.546 bad 2 63 22
GSM928869 0 0.57 renal allograft biopsy 4 not specified IGF 0.952 good 4 22 7
GSM928868 0 0.881 renal allograft biopsy 3 not specified IGF 1.143 bad 3 39 8
GSM928867 50 1.127 renal allograft biopsy not specified not specified IGF 1.639 good not specified 65 36
GSM928866 0 0.495 renal allograft biopsy 0 not specified IGF 0.818 good 0 16 12
GSM928865 0 0.678 renal allograft biopsy 4 not specified IGF 0.93 good 4 25 14
GSM928864 not specified 0.901 renal allograft biopsy 4 not specified IGF 1.426 good 4 54 21
GSM928863 0 0.804 renal allograft biopsy 7 not specified IGF 2.174 good 7 4 19
GSM928862 0 0.737 renal allograft biopsy 3 not specified DGF 1.176 bad 3 54 29
GSM92886 4 0.803 renal allograft biopsy 4 not specified IGF 1.191 good 4 52 15
GSM928860 3.08 1.022 renal allograft biopsy 0 not specified IGF 1.291 good 0 53 11
GSM928859 25 1.011 renal allograft biopsy 6 not specified IGF 1.543 good 6 58 25
GSM928858 0 0.786 renal allograft biopsy 0 not specified IGF 1.302 good 0 43 27
GSM928857 6.4 1.307 renal allograft biopsy 7 not specified IGF 1.743 good 7 69 31
GSM928856 0 0.873 renal allograft biopsy 4 not specified IGF 1.562 good 4 59 31
GSM928855 0 0.791 renal allograft biopsy 4 not specified IGF 1.392 good 4 34 36
GSM928854 6.4 1.354 renal allograft biopsy 4 not specified IGF 2.108 good 4 69 36
GSM928853 12.5 0.583 renal allograft biopsy 7 not specified IGF 1.16 good 7 48 46
GSM928852 0 0.85 renal allograft biopsy 4 not specified IGF 1.311 good 4 42 20
GSM92885 25 0.873 renal allograft biopsy 9 not specified IGF 2.675 good 9 50 34
GSM928850 0 0.589 renal allograft biopsy 0 not specified IGF 1.002 good 0 28 11
GSM928849 11.11 0.747 renal allograft biopsy 0 not specified IGF 1.147 good 0 33 23
GSM928848 16 1.221 renal allograft biopsy 6 not specified DGF 3.991 bad 6 70 35
GSM928847 0 0.382 renal allograft biopsy 4 not specified DGF 1.037 bad 4 13 9
GSM928846 0 0.426 renal allograft biopsy 0 not specified IGF 0.79 good 0 19 18
GSM928845 0 0.804 renal allograft biopsy 4 not specified IGF 1.14 good 4 53 11
GSM928844 not specified 0.917 renal allograft biopsy not specified not specified IGF 1.464 good not specified 59 21
GSM928843 3.33 0.786 renal allograft biopsy 0 not specified IGF 1.097 good 0 43 22
GSM928842 0 0.855 renal allograft biopsy 0 not specified DGF 0.981 bad 0 43 17
GSM92884 16.67 0.431 renal allograft biopsy 2 not specified IGF 1.007 good 2 46 15
GSM928840 0 0.722 renal allograft biopsy not specified not specified IGF 0.755 good not specified 18 22
GSM928839 not specified 1.086 renal allograft biopsy 0 not specified DGF 1.752 bad 0 66 21
GSM928838 0 0.722 renal allograft biopsy 4 not specified IGF 1 good 4 19 17
GSM928837 12.5 0.765 renal allograft biopsy not specified not specified IGF 1.164 good not specified 54 21
GSM928836 0 0.719 renal allograft biopsy 0 not specified IGF 1.191 good 0 43 16
GSM928835 27.27 0.631 renal allograft biopsy 6 not specified IGF 0.812 good 6 23 18
GSM928834 0 1.127 renal allograft biopsy 4 not specified DGF 1.594 bad 4 65 14
GSM928833 8.33 0.687 renal allograft biopsy 0 not specified DGF 0.998 bad 0 52 28
GSM928832 15.79 0.946 renal allograft biopsy 6 not specified IGF 1.243 good 6 43 14
GSM92883 0 0.855 renal allograft biopsy 0 not specified IGF 1.111 bad 0 47 13
GSM928830 11.11 0.719 renal allograft biopsy 3 not specified IGF 1.167 good 3 43 39
GSM928829 18.18 0.92 renal allograft biopsy not specified not specified IGF 1.442 good not specified 52 39
GSM928828 7.14 0.533 renal allograft biopsy 4 not specified IGF 0.968 good 4 46 18
GSM928827 0 0.94 renal allograft biopsy 3 not specified IGF 1.194 bad 3 51 11
GSM928826 0 1.1 renal allograft biopsy 0 not specified IGF 1.497 good 0 56 18
GSM928825 14.29 0.806 renal allograft biopsy 0 not specified IGF 1.265 good 0 55 25
GSM928824 17.74 1.236 renal allograft biopsy 6 not specified IGF 1.711 good 6 52 29
GSM928823 0 0.587 renal allograft biopsy 0 not specified IGF 0.765 good 0 17 8
GSM928822 9.09 0.694 renal allograft biopsy 4 not specified IGF 1.342 good 4 43 14
GSM92882 0 0.384 renal allograft biopsy 3 not specified IGF 0.679 good 3 17 9
GSM928820 0 0.495 renal allograft biopsy 4 not specified IGF 0.867 good 4 16 11
GSM928819 0 0.451 renal allograft biopsy 3 not specified IGF 0.758 good 3 23 13
GSM928818 0 0.6 renal allograft biopsy 0 not specified IGF 0.84 good 0 22 11
GSM928817 0 1.144 renal allograft biopsy not specified not specified DGF 1.524 bad not specified 51 30
GSM928816 0 1.144 renal allograft biopsy not specified not specified IGF 1.516 bad not specified 53 33
GSM928815 not specified 0.806 renal allograft biopsy not specified not specified IGF 1.351 good not specified 59 19

Tags

  • glomerulosclerosis
  • kidney
  • serum

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