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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION GEO SAMPLE DIAGNOSIS GOOD,BAD MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DGF STATUS KDRI DONOR AGE IRISH SCORE
GSM928892 not specified not specified nephrectomy not specified GSM880500 nephrectomy not specified nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified GSM880447 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified GSM880430 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified GSM880318 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified GSM880311 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified GSM880299 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified GSM880246 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified GSM880245 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 not specified good 2 IGF 0.999 13 9
GSM928883 3.03 0.804 renal allograft biopsy 0 not specified good 0 IGF 1.281 55 16
GSM928882 18.18 1.135 renal allograft biopsy not specified not specified bad not specified IGF 2.032 68 41
GSM92888 not specified 1.066 renal allograft biopsy 4 not specified bad 4 DGF 1.528 52 43
GSM928880 2.56 0.495 renal allograft biopsy 0 not specified good 0 IGF 0.779 17 16
GSM928879 not specified 0.745 renal allograft biopsy not specified not specified good not specified IGF 1.116 39 23
GSM928878 8.33 0.451 renal allograft biopsy 4 not specified good 4 IGF 0.85 26 11
GSM928877 3.03 0.765 renal allograft biopsy 0 not specified good 0 IGF 1.267 55 22
GSM928876 0 1.009 renal allograft biopsy 4 not specified good 4 IGF 1.187 53 19
GSM928875 0 0.678 renal allograft biopsy 7 not specified good 7 IGF 0.97 19 6
GSM928874 0 0.644 renal allograft biopsy 7 not specified good 7 IGF 0.681 18 13
GSM928873 not specified 0.922 renal allograft biopsy not specified not specified bad not specified DGF 1.668 50 40
GSM928872 4.35 0.873 renal allograft biopsy 3 not specified bad 3 DGF 1.362 52 22
GSM92887 0 0.426 renal allograft biopsy not specified not specified good not specified IGF 0.756 17 8
GSM928870 16.67 0.941 renal allograft biopsy 2 not specified bad 2 DGF 1.546 63 22
GSM928869 0 0.57 renal allograft biopsy 4 not specified good 4 IGF 0.952 22 7
GSM928868 0 0.881 renal allograft biopsy 3 not specified bad 3 IGF 1.143 39 8
GSM928867 50 1.127 renal allograft biopsy not specified not specified good not specified IGF 1.639 65 36
GSM928866 0 0.495 renal allograft biopsy 0 not specified good 0 IGF 0.818 16 12
GSM928865 0 0.678 renal allograft biopsy 4 not specified good 4 IGF 0.93 25 14
GSM928864 not specified 0.901 renal allograft biopsy 4 not specified good 4 IGF 1.426 54 21
GSM928863 0 0.804 renal allograft biopsy 7 not specified good 7 IGF 2.174 4 19
GSM928862 0 0.737 renal allograft biopsy 3 not specified bad 3 DGF 1.176 54 29
GSM92886 4 0.803 renal allograft biopsy 4 not specified good 4 IGF 1.191 52 15
GSM928860 3.08 1.022 renal allograft biopsy 0 not specified good 0 IGF 1.291 53 11
GSM928859 25 1.011 renal allograft biopsy 6 not specified good 6 IGF 1.543 58 25
GSM928858 0 0.786 renal allograft biopsy 0 not specified good 0 IGF 1.302 43 27
GSM928857 6.4 1.307 renal allograft biopsy 7 not specified good 7 IGF 1.743 69 31
GSM928856 0 0.873 renal allograft biopsy 4 not specified good 4 IGF 1.562 59 31
GSM928855 0 0.791 renal allograft biopsy 4 not specified good 4 IGF 1.392 34 36
GSM928854 6.4 1.354 renal allograft biopsy 4 not specified good 4 IGF 2.108 69 36
GSM928853 12.5 0.583 renal allograft biopsy 7 not specified good 7 IGF 1.16 48 46
GSM928852 0 0.85 renal allograft biopsy 4 not specified good 4 IGF 1.311 42 20
GSM92885 25 0.873 renal allograft biopsy 9 not specified good 9 IGF 2.675 50 34
GSM928850 0 0.589 renal allograft biopsy 0 not specified good 0 IGF 1.002 28 11
GSM928849 11.11 0.747 renal allograft biopsy 0 not specified good 0 IGF 1.147 33 23
GSM928848 16 1.221 renal allograft biopsy 6 not specified bad 6 DGF 3.991 70 35
GSM928847 0 0.382 renal allograft biopsy 4 not specified bad 4 DGF 1.037 13 9
GSM928846 0 0.426 renal allograft biopsy 0 not specified good 0 IGF 0.79 19 18
GSM928845 0 0.804 renal allograft biopsy 4 not specified good 4 IGF 1.14 53 11
GSM928844 not specified 0.917 renal allograft biopsy not specified not specified good not specified IGF 1.464 59 21
GSM928843 3.33 0.786 renal allograft biopsy 0 not specified good 0 IGF 1.097 43 22
GSM928842 0 0.855 renal allograft biopsy 0 not specified bad 0 DGF 0.981 43 17
GSM92884 16.67 0.431 renal allograft biopsy 2 not specified good 2 IGF 1.007 46 15
GSM928840 0 0.722 renal allograft biopsy not specified not specified good not specified IGF 0.755 18 22
GSM928839 not specified 1.086 renal allograft biopsy 0 not specified bad 0 DGF 1.752 66 21
GSM928838 0 0.722 renal allograft biopsy 4 not specified good 4 IGF 1 19 17
GSM928837 12.5 0.765 renal allograft biopsy not specified not specified good not specified IGF 1.164 54 21
GSM928836 0 0.719 renal allograft biopsy 0 not specified good 0 IGF 1.191 43 16
GSM928835 27.27 0.631 renal allograft biopsy 6 not specified good 6 IGF 0.812 23 18
GSM928834 0 1.127 renal allograft biopsy 4 not specified bad 4 DGF 1.594 65 14
GSM928833 8.33 0.687 renal allograft biopsy 0 not specified bad 0 DGF 0.998 52 28
GSM928832 15.79 0.946 renal allograft biopsy 6 not specified good 6 IGF 1.243 43 14
GSM92883 0 0.855 renal allograft biopsy 0 not specified bad 0 IGF 1.111 47 13
GSM928830 11.11 0.719 renal allograft biopsy 3 not specified good 3 IGF 1.167 43 39
GSM928829 18.18 0.92 renal allograft biopsy not specified not specified good not specified IGF 1.442 52 39
GSM928828 7.14 0.533 renal allograft biopsy 4 not specified good 4 IGF 0.968 46 18
GSM928827 0 0.94 renal allograft biopsy 3 not specified bad 3 IGF 1.194 51 11
GSM928826 0 1.1 renal allograft biopsy 0 not specified good 0 IGF 1.497 56 18
GSM928825 14.29 0.806 renal allograft biopsy 0 not specified good 0 IGF 1.265 55 25
GSM928824 17.74 1.236 renal allograft biopsy 6 not specified good 6 IGF 1.711 52 29
GSM928823 0 0.587 renal allograft biopsy 0 not specified good 0 IGF 0.765 17 8
GSM928822 9.09 0.694 renal allograft biopsy 4 not specified good 4 IGF 1.342 43 14
GSM92882 0 0.384 renal allograft biopsy 3 not specified good 3 IGF 0.679 17 9
GSM928820 0 0.495 renal allograft biopsy 4 not specified good 4 IGF 0.867 16 11
GSM928819 0 0.451 renal allograft biopsy 3 not specified good 3 IGF 0.758 23 13
GSM928818 0 0.6 renal allograft biopsy 0 not specified good 0 IGF 0.84 22 11
GSM928817 0 1.144 renal allograft biopsy not specified not specified bad not specified DGF 1.524 51 30
GSM928816 0 1.144 renal allograft biopsy not specified not specified bad not specified IGF 1.516 53 33
GSM928815 not specified 0.806 renal allograft biopsy not specified not specified good not specified IGF 1.351 59 19

Tags

  • glomerulosclerosis
  • kidney
  • serum

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