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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE GEO SAMPLE KDRI DGF STATUS MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DIAGNOSIS GOOD,BAD IRISH SCORE
GSM928892 not specified not specified nephrectomy not specified not specified GSM880500 not specified nephrectomy not specified nephrectomy not specified
GSM92889 not specified not specified nephrectomy not specified not specified GSM880447 not specified nephrectomy not specified nephrectomy not specified
GSM928890 not specified not specified nephrectomy not specified not specified GSM880430 not specified nephrectomy not specified nephrectomy not specified
GSM928889 not specified not specified nephrectomy not specified not specified GSM880318 not specified nephrectomy not specified nephrectomy not specified
GSM928888 not specified not specified nephrectomy not specified not specified GSM880311 not specified nephrectomy not specified nephrectomy not specified
GSM928887 not specified not specified nephrectomy not specified not specified GSM880299 not specified nephrectomy not specified nephrectomy not specified
GSM928886 not specified not specified nephrectomy not specified not specified GSM880246 not specified nephrectomy not specified nephrectomy not specified
GSM928885 not specified not specified nephrectomy not specified not specified GSM880245 not specified nephrectomy not specified nephrectomy not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 13 not specified 0.999 IGF 2 good 9
GSM928883 3.03 0.804 renal allograft biopsy 0 55 not specified 1.281 IGF 0 good 16
GSM928882 18.18 1.135 renal allograft biopsy not specified 68 not specified 2.032 IGF not specified bad 41
GSM92888 not specified 1.066 renal allograft biopsy 4 52 not specified 1.528 DGF 4 bad 43
GSM928880 2.56 0.495 renal allograft biopsy 0 17 not specified 0.779 IGF 0 good 16
GSM928879 not specified 0.745 renal allograft biopsy not specified 39 not specified 1.116 IGF not specified good 23
GSM928878 8.33 0.451 renal allograft biopsy 4 26 not specified 0.85 IGF 4 good 11
GSM928877 3.03 0.765 renal allograft biopsy 0 55 not specified 1.267 IGF 0 good 22
GSM928876 0 1.009 renal allograft biopsy 4 53 not specified 1.187 IGF 4 good 19
GSM928875 0 0.678 renal allograft biopsy 7 19 not specified 0.97 IGF 7 good 6
GSM928874 0 0.644 renal allograft biopsy 7 18 not specified 0.681 IGF 7 good 13
GSM928873 not specified 0.922 renal allograft biopsy not specified 50 not specified 1.668 DGF not specified bad 40
GSM928872 4.35 0.873 renal allograft biopsy 3 52 not specified 1.362 DGF 3 bad 22
GSM92887 0 0.426 renal allograft biopsy not specified 17 not specified 0.756 IGF not specified good 8
GSM928870 16.67 0.941 renal allograft biopsy 2 63 not specified 1.546 DGF 2 bad 22
GSM928869 0 0.57 renal allograft biopsy 4 22 not specified 0.952 IGF 4 good 7
GSM928868 0 0.881 renal allograft biopsy 3 39 not specified 1.143 IGF 3 bad 8
GSM928867 50 1.127 renal allograft biopsy not specified 65 not specified 1.639 IGF not specified good 36
GSM928866 0 0.495 renal allograft biopsy 0 16 not specified 0.818 IGF 0 good 12
GSM928865 0 0.678 renal allograft biopsy 4 25 not specified 0.93 IGF 4 good 14
GSM928864 not specified 0.901 renal allograft biopsy 4 54 not specified 1.426 IGF 4 good 21
GSM928863 0 0.804 renal allograft biopsy 7 4 not specified 2.174 IGF 7 good 19
GSM928862 0 0.737 renal allograft biopsy 3 54 not specified 1.176 DGF 3 bad 29
GSM92886 4 0.803 renal allograft biopsy 4 52 not specified 1.191 IGF 4 good 15
GSM928860 3.08 1.022 renal allograft biopsy 0 53 not specified 1.291 IGF 0 good 11
GSM928859 25 1.011 renal allograft biopsy 6 58 not specified 1.543 IGF 6 good 25
GSM928858 0 0.786 renal allograft biopsy 0 43 not specified 1.302 IGF 0 good 27
GSM928857 6.4 1.307 renal allograft biopsy 7 69 not specified 1.743 IGF 7 good 31
GSM928856 0 0.873 renal allograft biopsy 4 59 not specified 1.562 IGF 4 good 31
GSM928855 0 0.791 renal allograft biopsy 4 34 not specified 1.392 IGF 4 good 36
GSM928854 6.4 1.354 renal allograft biopsy 4 69 not specified 2.108 IGF 4 good 36
GSM928853 12.5 0.583 renal allograft biopsy 7 48 not specified 1.16 IGF 7 good 46
GSM928852 0 0.85 renal allograft biopsy 4 42 not specified 1.311 IGF 4 good 20
GSM92885 25 0.873 renal allograft biopsy 9 50 not specified 2.675 IGF 9 good 34
GSM928850 0 0.589 renal allograft biopsy 0 28 not specified 1.002 IGF 0 good 11
GSM928849 11.11 0.747 renal allograft biopsy 0 33 not specified 1.147 IGF 0 good 23
GSM928848 16 1.221 renal allograft biopsy 6 70 not specified 3.991 DGF 6 bad 35
GSM928847 0 0.382 renal allograft biopsy 4 13 not specified 1.037 DGF 4 bad 9
GSM928846 0 0.426 renal allograft biopsy 0 19 not specified 0.79 IGF 0 good 18
GSM928845 0 0.804 renal allograft biopsy 4 53 not specified 1.14 IGF 4 good 11
GSM928844 not specified 0.917 renal allograft biopsy not specified 59 not specified 1.464 IGF not specified good 21
GSM928843 3.33 0.786 renal allograft biopsy 0 43 not specified 1.097 IGF 0 good 22
GSM928842 0 0.855 renal allograft biopsy 0 43 not specified 0.981 DGF 0 bad 17
GSM92884 16.67 0.431 renal allograft biopsy 2 46 not specified 1.007 IGF 2 good 15
GSM928840 0 0.722 renal allograft biopsy not specified 18 not specified 0.755 IGF not specified good 22
GSM928839 not specified 1.086 renal allograft biopsy 0 66 not specified 1.752 DGF 0 bad 21
GSM928838 0 0.722 renal allograft biopsy 4 19 not specified 1 IGF 4 good 17
GSM928837 12.5 0.765 renal allograft biopsy not specified 54 not specified 1.164 IGF not specified good 21
GSM928836 0 0.719 renal allograft biopsy 0 43 not specified 1.191 IGF 0 good 16
GSM928835 27.27 0.631 renal allograft biopsy 6 23 not specified 0.812 IGF 6 good 18
GSM928834 0 1.127 renal allograft biopsy 4 65 not specified 1.594 DGF 4 bad 14
GSM928833 8.33 0.687 renal allograft biopsy 0 52 not specified 0.998 DGF 0 bad 28
GSM928832 15.79 0.946 renal allograft biopsy 6 43 not specified 1.243 IGF 6 good 14
GSM92883 0 0.855 renal allograft biopsy 0 47 not specified 1.111 IGF 0 bad 13
GSM928830 11.11 0.719 renal allograft biopsy 3 43 not specified 1.167 IGF 3 good 39
GSM928829 18.18 0.92 renal allograft biopsy not specified 52 not specified 1.442 IGF not specified good 39
GSM928828 7.14 0.533 renal allograft biopsy 4 46 not specified 0.968 IGF 4 good 18
GSM928827 0 0.94 renal allograft biopsy 3 51 not specified 1.194 IGF 3 bad 11
GSM928826 0 1.1 renal allograft biopsy 0 56 not specified 1.497 IGF 0 good 18
GSM928825 14.29 0.806 renal allograft biopsy 0 55 not specified 1.265 IGF 0 good 25
GSM928824 17.74 1.236 renal allograft biopsy 6 52 not specified 1.711 IGF 6 good 29
GSM928823 0 0.587 renal allograft biopsy 0 17 not specified 0.765 IGF 0 good 8
GSM928822 9.09 0.694 renal allograft biopsy 4 43 not specified 1.342 IGF 4 good 14
GSM92882 0 0.384 renal allograft biopsy 3 17 not specified 0.679 IGF 3 good 9
GSM928820 0 0.495 renal allograft biopsy 4 16 not specified 0.867 IGF 4 good 11
GSM928819 0 0.451 renal allograft biopsy 3 23 not specified 0.758 IGF 3 good 13
GSM928818 0 0.6 renal allograft biopsy 0 22 not specified 0.84 IGF 0 good 11
GSM928817 0 1.144 renal allograft biopsy not specified 51 not specified 1.524 DGF not specified bad 30
GSM928816 0 1.144 renal allograft biopsy not specified 53 not specified 1.516 IGF not specified bad 33
GSM928815 not specified 0.806 renal allograft biopsy not specified 59 not specified 1.351 IGF not specified good 19

Tags

  • glomerulosclerosis
  • kidney
  • serum

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