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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION IRISH SCORE GEO SAMPLE DGF STATUS DIAGNOSIS GOOD,BAD MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE KDRI
GSM928892 not specified not specified nephrectomy not specified not specified GSM880500 nephrectomy nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified not specified GSM880447 nephrectomy nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified not specified GSM880430 nephrectomy nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified not specified GSM880318 nephrectomy nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified not specified GSM880311 nephrectomy nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified not specified GSM880299 nephrectomy nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified not specified GSM880246 nephrectomy nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified not specified GSM880245 nephrectomy nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 9 not specified IGF good 2 13 0.999
GSM928883 3.03 0.804 renal allograft biopsy 0 16 not specified IGF good 0 55 1.281
GSM928882 18.18 1.135 renal allograft biopsy not specified 41 not specified IGF bad not specified 68 2.032
GSM92888 not specified 1.066 renal allograft biopsy 4 43 not specified DGF bad 4 52 1.528
GSM928880 2.56 0.495 renal allograft biopsy 0 16 not specified IGF good 0 17 0.779
GSM928879 not specified 0.745 renal allograft biopsy not specified 23 not specified IGF good not specified 39 1.116
GSM928878 8.33 0.451 renal allograft biopsy 4 11 not specified IGF good 4 26 0.85
GSM928877 3.03 0.765 renal allograft biopsy 0 22 not specified IGF good 0 55 1.267
GSM928876 0 1.009 renal allograft biopsy 4 19 not specified IGF good 4 53 1.187
GSM928875 0 0.678 renal allograft biopsy 7 6 not specified IGF good 7 19 0.97
GSM928874 0 0.644 renal allograft biopsy 7 13 not specified IGF good 7 18 0.681
GSM928873 not specified 0.922 renal allograft biopsy not specified 40 not specified DGF bad not specified 50 1.668
GSM928872 4.35 0.873 renal allograft biopsy 3 22 not specified DGF bad 3 52 1.362
GSM92887 0 0.426 renal allograft biopsy not specified 8 not specified IGF good not specified 17 0.756
GSM928870 16.67 0.941 renal allograft biopsy 2 22 not specified DGF bad 2 63 1.546
GSM928869 0 0.57 renal allograft biopsy 4 7 not specified IGF good 4 22 0.952
GSM928868 0 0.881 renal allograft biopsy 3 8 not specified IGF bad 3 39 1.143
GSM928867 50 1.127 renal allograft biopsy not specified 36 not specified IGF good not specified 65 1.639
GSM928866 0 0.495 renal allograft biopsy 0 12 not specified IGF good 0 16 0.818
GSM928865 0 0.678 renal allograft biopsy 4 14 not specified IGF good 4 25 0.93
GSM928864 not specified 0.901 renal allograft biopsy 4 21 not specified IGF good 4 54 1.426
GSM928863 0 0.804 renal allograft biopsy 7 19 not specified IGF good 7 4 2.174
GSM928862 0 0.737 renal allograft biopsy 3 29 not specified DGF bad 3 54 1.176
GSM92886 4 0.803 renal allograft biopsy 4 15 not specified IGF good 4 52 1.191
GSM928860 3.08 1.022 renal allograft biopsy 0 11 not specified IGF good 0 53 1.291
GSM928859 25 1.011 renal allograft biopsy 6 25 not specified IGF good 6 58 1.543
GSM928858 0 0.786 renal allograft biopsy 0 27 not specified IGF good 0 43 1.302
GSM928857 6.4 1.307 renal allograft biopsy 7 31 not specified IGF good 7 69 1.743
GSM928856 0 0.873 renal allograft biopsy 4 31 not specified IGF good 4 59 1.562
GSM928855 0 0.791 renal allograft biopsy 4 36 not specified IGF good 4 34 1.392
GSM928854 6.4 1.354 renal allograft biopsy 4 36 not specified IGF good 4 69 2.108
GSM928853 12.5 0.583 renal allograft biopsy 7 46 not specified IGF good 7 48 1.16
GSM928852 0 0.85 renal allograft biopsy 4 20 not specified IGF good 4 42 1.311
GSM92885 25 0.873 renal allograft biopsy 9 34 not specified IGF good 9 50 2.675
GSM928850 0 0.589 renal allograft biopsy 0 11 not specified IGF good 0 28 1.002
GSM928849 11.11 0.747 renal allograft biopsy 0 23 not specified IGF good 0 33 1.147
GSM928848 16 1.221 renal allograft biopsy 6 35 not specified DGF bad 6 70 3.991
GSM928847 0 0.382 renal allograft biopsy 4 9 not specified DGF bad 4 13 1.037
GSM928846 0 0.426 renal allograft biopsy 0 18 not specified IGF good 0 19 0.79
GSM928845 0 0.804 renal allograft biopsy 4 11 not specified IGF good 4 53 1.14
GSM928844 not specified 0.917 renal allograft biopsy not specified 21 not specified IGF good not specified 59 1.464
GSM928843 3.33 0.786 renal allograft biopsy 0 22 not specified IGF good 0 43 1.097
GSM928842 0 0.855 renal allograft biopsy 0 17 not specified DGF bad 0 43 0.981
GSM92884 16.67 0.431 renal allograft biopsy 2 15 not specified IGF good 2 46 1.007
GSM928840 0 0.722 renal allograft biopsy not specified 22 not specified IGF good not specified 18 0.755
GSM928839 not specified 1.086 renal allograft biopsy 0 21 not specified DGF bad 0 66 1.752
GSM928838 0 0.722 renal allograft biopsy 4 17 not specified IGF good 4 19 1
GSM928837 12.5 0.765 renal allograft biopsy not specified 21 not specified IGF good not specified 54 1.164
GSM928836 0 0.719 renal allograft biopsy 0 16 not specified IGF good 0 43 1.191
GSM928835 27.27 0.631 renal allograft biopsy 6 18 not specified IGF good 6 23 0.812
GSM928834 0 1.127 renal allograft biopsy 4 14 not specified DGF bad 4 65 1.594
GSM928833 8.33 0.687 renal allograft biopsy 0 28 not specified DGF bad 0 52 0.998
GSM928832 15.79 0.946 renal allograft biopsy 6 14 not specified IGF good 6 43 1.243
GSM92883 0 0.855 renal allograft biopsy 0 13 not specified IGF bad 0 47 1.111
GSM928830 11.11 0.719 renal allograft biopsy 3 39 not specified IGF good 3 43 1.167
GSM928829 18.18 0.92 renal allograft biopsy not specified 39 not specified IGF good not specified 52 1.442
GSM928828 7.14 0.533 renal allograft biopsy 4 18 not specified IGF good 4 46 0.968
GSM928827 0 0.94 renal allograft biopsy 3 11 not specified IGF bad 3 51 1.194
GSM928826 0 1.1 renal allograft biopsy 0 18 not specified IGF good 0 56 1.497
GSM928825 14.29 0.806 renal allograft biopsy 0 25 not specified IGF good 0 55 1.265
GSM928824 17.74 1.236 renal allograft biopsy 6 29 not specified IGF good 6 52 1.711
GSM928823 0 0.587 renal allograft biopsy 0 8 not specified IGF good 0 17 0.765
GSM928822 9.09 0.694 renal allograft biopsy 4 14 not specified IGF good 4 43 1.342
GSM92882 0 0.384 renal allograft biopsy 3 9 not specified IGF good 3 17 0.679
GSM928820 0 0.495 renal allograft biopsy 4 11 not specified IGF good 4 16 0.867
GSM928819 0 0.451 renal allograft biopsy 3 13 not specified IGF good 3 23 0.758
GSM928818 0 0.6 renal allograft biopsy 0 11 not specified IGF good 0 22 0.84
GSM928817 0 1.144 renal allograft biopsy not specified 30 not specified DGF bad not specified 51 1.524
GSM928816 0 1.144 renal allograft biopsy not specified 33 not specified IGF bad not specified 53 1.516
GSM928815 not specified 0.806 renal allograft biopsy not specified 19 not specified IGF good not specified 59 1.351

Tags

  • glomerulosclerosis
  • kidney
  • serum

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