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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION IRISH SCORE DGF STATUS KDRI DIAGNOSIS GOOD,BAD MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE GEO SAMPLE
GSM928892 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880500
GSM92889 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880447
GSM928890 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880430
GSM928889 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880318
GSM928888 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880311
GSM928887 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880299
GSM928886 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880246
GSM928885 not specified not specified nephrectomy not specified not specified nephrectomy not specified nephrectomy not specified not specified GSM880245
GSM928884 33.33 0.382 renal allograft biopsy 2 9 IGF 0.999 good 2 13 not specified
GSM928883 3.03 0.804 renal allograft biopsy 0 16 IGF 1.281 good 0 55 not specified
GSM928882 18.18 1.135 renal allograft biopsy not specified 41 IGF 2.032 bad not specified 68 not specified
GSM92888 not specified 1.066 renal allograft biopsy 4 43 DGF 1.528 bad 4 52 not specified
GSM928880 2.56 0.495 renal allograft biopsy 0 16 IGF 0.779 good 0 17 not specified
GSM928879 not specified 0.745 renal allograft biopsy not specified 23 IGF 1.116 good not specified 39 not specified
GSM928878 8.33 0.451 renal allograft biopsy 4 11 IGF 0.85 good 4 26 not specified
GSM928877 3.03 0.765 renal allograft biopsy 0 22 IGF 1.267 good 0 55 not specified
GSM928876 0 1.009 renal allograft biopsy 4 19 IGF 1.187 good 4 53 not specified
GSM928875 0 0.678 renal allograft biopsy 7 6 IGF 0.97 good 7 19 not specified
GSM928874 0 0.644 renal allograft biopsy 7 13 IGF 0.681 good 7 18 not specified
GSM928873 not specified 0.922 renal allograft biopsy not specified 40 DGF 1.668 bad not specified 50 not specified
GSM928872 4.35 0.873 renal allograft biopsy 3 22 DGF 1.362 bad 3 52 not specified
GSM92887 0 0.426 renal allograft biopsy not specified 8 IGF 0.756 good not specified 17 not specified
GSM928870 16.67 0.941 renal allograft biopsy 2 22 DGF 1.546 bad 2 63 not specified
GSM928869 0 0.57 renal allograft biopsy 4 7 IGF 0.952 good 4 22 not specified
GSM928868 0 0.881 renal allograft biopsy 3 8 IGF 1.143 bad 3 39 not specified
GSM928867 50 1.127 renal allograft biopsy not specified 36 IGF 1.639 good not specified 65 not specified
GSM928866 0 0.495 renal allograft biopsy 0 12 IGF 0.818 good 0 16 not specified
GSM928865 0 0.678 renal allograft biopsy 4 14 IGF 0.93 good 4 25 not specified
GSM928864 not specified 0.901 renal allograft biopsy 4 21 IGF 1.426 good 4 54 not specified
GSM928863 0 0.804 renal allograft biopsy 7 19 IGF 2.174 good 7 4 not specified
GSM928862 0 0.737 renal allograft biopsy 3 29 DGF 1.176 bad 3 54 not specified
GSM92886 4 0.803 renal allograft biopsy 4 15 IGF 1.191 good 4 52 not specified
GSM928860 3.08 1.022 renal allograft biopsy 0 11 IGF 1.291 good 0 53 not specified
GSM928859 25 1.011 renal allograft biopsy 6 25 IGF 1.543 good 6 58 not specified
GSM928858 0 0.786 renal allograft biopsy 0 27 IGF 1.302 good 0 43 not specified
GSM928857 6.4 1.307 renal allograft biopsy 7 31 IGF 1.743 good 7 69 not specified
GSM928856 0 0.873 renal allograft biopsy 4 31 IGF 1.562 good 4 59 not specified
GSM928855 0 0.791 renal allograft biopsy 4 36 IGF 1.392 good 4 34 not specified
GSM928854 6.4 1.354 renal allograft biopsy 4 36 IGF 2.108 good 4 69 not specified
GSM928853 12.5 0.583 renal allograft biopsy 7 46 IGF 1.16 good 7 48 not specified
GSM928852 0 0.85 renal allograft biopsy 4 20 IGF 1.311 good 4 42 not specified
GSM92885 25 0.873 renal allograft biopsy 9 34 IGF 2.675 good 9 50 not specified
GSM928850 0 0.589 renal allograft biopsy 0 11 IGF 1.002 good 0 28 not specified
GSM928849 11.11 0.747 renal allograft biopsy 0 23 IGF 1.147 good 0 33 not specified
GSM928848 16 1.221 renal allograft biopsy 6 35 DGF 3.991 bad 6 70 not specified
GSM928847 0 0.382 renal allograft biopsy 4 9 DGF 1.037 bad 4 13 not specified
GSM928846 0 0.426 renal allograft biopsy 0 18 IGF 0.79 good 0 19 not specified
GSM928845 0 0.804 renal allograft biopsy 4 11 IGF 1.14 good 4 53 not specified
GSM928844 not specified 0.917 renal allograft biopsy not specified 21 IGF 1.464 good not specified 59 not specified
GSM928843 3.33 0.786 renal allograft biopsy 0 22 IGF 1.097 good 0 43 not specified
GSM928842 0 0.855 renal allograft biopsy 0 17 DGF 0.981 bad 0 43 not specified
GSM92884 16.67 0.431 renal allograft biopsy 2 15 IGF 1.007 good 2 46 not specified
GSM928840 0 0.722 renal allograft biopsy not specified 22 IGF 0.755 good not specified 18 not specified
GSM928839 not specified 1.086 renal allograft biopsy 0 21 DGF 1.752 bad 0 66 not specified
GSM928838 0 0.722 renal allograft biopsy 4 17 IGF 1 good 4 19 not specified
GSM928837 12.5 0.765 renal allograft biopsy not specified 21 IGF 1.164 good not specified 54 not specified
GSM928836 0 0.719 renal allograft biopsy 0 16 IGF 1.191 good 0 43 not specified
GSM928835 27.27 0.631 renal allograft biopsy 6 18 IGF 0.812 good 6 23 not specified
GSM928834 0 1.127 renal allograft biopsy 4 14 DGF 1.594 bad 4 65 not specified
GSM928833 8.33 0.687 renal allograft biopsy 0 28 DGF 0.998 bad 0 52 not specified
GSM928832 15.79 0.946 renal allograft biopsy 6 14 IGF 1.243 good 6 43 not specified
GSM92883 0 0.855 renal allograft biopsy 0 13 IGF 1.111 bad 0 47 not specified
GSM928830 11.11 0.719 renal allograft biopsy 3 39 IGF 1.167 good 3 43 not specified
GSM928829 18.18 0.92 renal allograft biopsy not specified 39 IGF 1.442 good not specified 52 not specified
GSM928828 7.14 0.533 renal allograft biopsy 4 18 IGF 0.968 good 4 46 not specified
GSM928827 0 0.94 renal allograft biopsy 3 11 IGF 1.194 bad 3 51 not specified
GSM928826 0 1.1 renal allograft biopsy 0 18 IGF 1.497 good 0 56 not specified
GSM928825 14.29 0.806 renal allograft biopsy 0 25 IGF 1.265 good 0 55 not specified
GSM928824 17.74 1.236 renal allograft biopsy 6 29 IGF 1.711 good 6 52 not specified
GSM928823 0 0.587 renal allograft biopsy 0 8 IGF 0.765 good 0 17 not specified
GSM928822 9.09 0.694 renal allograft biopsy 4 14 IGF 1.342 good 4 43 not specified
GSM92882 0 0.384 renal allograft biopsy 3 9 IGF 0.679 good 3 17 not specified
GSM928820 0 0.495 renal allograft biopsy 4 11 IGF 0.867 good 4 16 not specified
GSM928819 0 0.451 renal allograft biopsy 3 13 IGF 0.758 good 3 23 not specified
GSM928818 0 0.6 renal allograft biopsy 0 11 IGF 0.84 good 0 22 not specified
GSM928817 0 1.144 renal allograft biopsy not specified 30 DGF 1.524 bad not specified 51 not specified
GSM928816 0 1.144 renal allograft biopsy not specified 33 IGF 1.516 bad not specified 53 not specified
GSM928815 not specified 0.806 renal allograft biopsy not specified 19 IGF 1.351 good not specified 59 not specified

Tags

  • glomerulosclerosis
  • kidney
  • serum

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