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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION GEO SAMPLE DGF STATUS MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DIAGNOSIS GOOD,BAD IRISH SCORE DONOR AGE KDRI
GSM928892 not specified not specified nephrectomy not specified GSM880500 nephrectomy not specified nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified GSM880447 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified GSM880430 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified GSM880318 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified GSM880311 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified GSM880299 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified GSM880246 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified GSM880245 nephrectomy not specified nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 not specified IGF 2 good 9 13 0.999
GSM928883 3.03 0.804 renal allograft biopsy 0 not specified IGF 0 good 16 55 1.281
GSM928882 18.18 1.135 renal allograft biopsy not specified not specified IGF not specified bad 41 68 2.032
GSM92888 not specified 1.066 renal allograft biopsy 4 not specified DGF 4 bad 43 52 1.528
GSM928880 2.56 0.495 renal allograft biopsy 0 not specified IGF 0 good 16 17 0.779
GSM928879 not specified 0.745 renal allograft biopsy not specified not specified IGF not specified good 23 39 1.116
GSM928878 8.33 0.451 renal allograft biopsy 4 not specified IGF 4 good 11 26 0.85
GSM928877 3.03 0.765 renal allograft biopsy 0 not specified IGF 0 good 22 55 1.267
GSM928876 0 1.009 renal allograft biopsy 4 not specified IGF 4 good 19 53 1.187
GSM928875 0 0.678 renal allograft biopsy 7 not specified IGF 7 good 6 19 0.97
GSM928874 0 0.644 renal allograft biopsy 7 not specified IGF 7 good 13 18 0.681
GSM928873 not specified 0.922 renal allograft biopsy not specified not specified DGF not specified bad 40 50 1.668
GSM928872 4.35 0.873 renal allograft biopsy 3 not specified DGF 3 bad 22 52 1.362
GSM92887 0 0.426 renal allograft biopsy not specified not specified IGF not specified good 8 17 0.756
GSM928870 16.67 0.941 renal allograft biopsy 2 not specified DGF 2 bad 22 63 1.546
GSM928869 0 0.57 renal allograft biopsy 4 not specified IGF 4 good 7 22 0.952
GSM928868 0 0.881 renal allograft biopsy 3 not specified IGF 3 bad 8 39 1.143
GSM928867 50 1.127 renal allograft biopsy not specified not specified IGF not specified good 36 65 1.639
GSM928866 0 0.495 renal allograft biopsy 0 not specified IGF 0 good 12 16 0.818
GSM928865 0 0.678 renal allograft biopsy 4 not specified IGF 4 good 14 25 0.93
GSM928864 not specified 0.901 renal allograft biopsy 4 not specified IGF 4 good 21 54 1.426
GSM928863 0 0.804 renal allograft biopsy 7 not specified IGF 7 good 19 4 2.174
GSM928862 0 0.737 renal allograft biopsy 3 not specified DGF 3 bad 29 54 1.176
GSM92886 4 0.803 renal allograft biopsy 4 not specified IGF 4 good 15 52 1.191
GSM928860 3.08 1.022 renal allograft biopsy 0 not specified IGF 0 good 11 53 1.291
GSM928859 25 1.011 renal allograft biopsy 6 not specified IGF 6 good 25 58 1.543
GSM928858 0 0.786 renal allograft biopsy 0 not specified IGF 0 good 27 43 1.302
GSM928857 6.4 1.307 renal allograft biopsy 7 not specified IGF 7 good 31 69 1.743
GSM928856 0 0.873 renal allograft biopsy 4 not specified IGF 4 good 31 59 1.562
GSM928855 0 0.791 renal allograft biopsy 4 not specified IGF 4 good 36 34 1.392
GSM928854 6.4 1.354 renal allograft biopsy 4 not specified IGF 4 good 36 69 2.108
GSM928853 12.5 0.583 renal allograft biopsy 7 not specified IGF 7 good 46 48 1.16
GSM928852 0 0.85 renal allograft biopsy 4 not specified IGF 4 good 20 42 1.311
GSM92885 25 0.873 renal allograft biopsy 9 not specified IGF 9 good 34 50 2.675
GSM928850 0 0.589 renal allograft biopsy 0 not specified IGF 0 good 11 28 1.002
GSM928849 11.11 0.747 renal allograft biopsy 0 not specified IGF 0 good 23 33 1.147
GSM928848 16 1.221 renal allograft biopsy 6 not specified DGF 6 bad 35 70 3.991
GSM928847 0 0.382 renal allograft biopsy 4 not specified DGF 4 bad 9 13 1.037
GSM928846 0 0.426 renal allograft biopsy 0 not specified IGF 0 good 18 19 0.79
GSM928845 0 0.804 renal allograft biopsy 4 not specified IGF 4 good 11 53 1.14
GSM928844 not specified 0.917 renal allograft biopsy not specified not specified IGF not specified good 21 59 1.464
GSM928843 3.33 0.786 renal allograft biopsy 0 not specified IGF 0 good 22 43 1.097
GSM928842 0 0.855 renal allograft biopsy 0 not specified DGF 0 bad 17 43 0.981
GSM92884 16.67 0.431 renal allograft biopsy 2 not specified IGF 2 good 15 46 1.007
GSM928840 0 0.722 renal allograft biopsy not specified not specified IGF not specified good 22 18 0.755
GSM928839 not specified 1.086 renal allograft biopsy 0 not specified DGF 0 bad 21 66 1.752
GSM928838 0 0.722 renal allograft biopsy 4 not specified IGF 4 good 17 19 1
GSM928837 12.5 0.765 renal allograft biopsy not specified not specified IGF not specified good 21 54 1.164
GSM928836 0 0.719 renal allograft biopsy 0 not specified IGF 0 good 16 43 1.191
GSM928835 27.27 0.631 renal allograft biopsy 6 not specified IGF 6 good 18 23 0.812
GSM928834 0 1.127 renal allograft biopsy 4 not specified DGF 4 bad 14 65 1.594
GSM928833 8.33 0.687 renal allograft biopsy 0 not specified DGF 0 bad 28 52 0.998
GSM928832 15.79 0.946 renal allograft biopsy 6 not specified IGF 6 good 14 43 1.243
GSM92883 0 0.855 renal allograft biopsy 0 not specified IGF 0 bad 13 47 1.111
GSM928830 11.11 0.719 renal allograft biopsy 3 not specified IGF 3 good 39 43 1.167
GSM928829 18.18 0.92 renal allograft biopsy not specified not specified IGF not specified good 39 52 1.442
GSM928828 7.14 0.533 renal allograft biopsy 4 not specified IGF 4 good 18 46 0.968
GSM928827 0 0.94 renal allograft biopsy 3 not specified IGF 3 bad 11 51 1.194
GSM928826 0 1.1 renal allograft biopsy 0 not specified IGF 0 good 18 56 1.497
GSM928825 14.29 0.806 renal allograft biopsy 0 not specified IGF 0 good 25 55 1.265
GSM928824 17.74 1.236 renal allograft biopsy 6 not specified IGF 6 good 29 52 1.711
GSM928823 0 0.587 renal allograft biopsy 0 not specified IGF 0 good 8 17 0.765
GSM928822 9.09 0.694 renal allograft biopsy 4 not specified IGF 4 good 14 43 1.342
GSM92882 0 0.384 renal allograft biopsy 3 not specified IGF 3 good 9 17 0.679
GSM928820 0 0.495 renal allograft biopsy 4 not specified IGF 4 good 11 16 0.867
GSM928819 0 0.451 renal allograft biopsy 3 not specified IGF 3 good 13 23 0.758
GSM928818 0 0.6 renal allograft biopsy 0 not specified IGF 0 good 11 22 0.84
GSM928817 0 1.144 renal allograft biopsy not specified not specified DGF not specified bad 30 51 1.524
GSM928816 0 1.144 renal allograft biopsy not specified not specified IGF not specified bad 33 53 1.516
GSM928815 not specified 0.806 renal allograft biopsy not specified not specified IGF not specified good 19 59 1.351

Tags

  • glomerulosclerosis
  • kidney
  • serum

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