Dataset: Transcription profiling of eyes from wild type and Bma knock-out mice after different lengths of time in a 12:12-hr LD cycle or in constant darkness to identify daily rhythms in ocular gene expression
To explore daily rhythms of ocular gene expression in adult mice we performed the following experiments: i) Mice were entrained to a...
To explore daily rhythms of ocular gene expression in adult mice we performed the following experiments: i) Mice were entrained to a 12:12-hr light-dark (LD) cycle for 3 weeks. Then mice were transferred to constant darkness (DD) or remained in LD and eyes were collected at four-hour intervals over a three-day period; ii) Bmal1-/- mice and wild-type littermates were entrained to a 12:12-hr LD cycle for 3 weeks and eyes were collected at four-hour intervals over a one-day period in LD.
- Species:
- mouse
- Samples:
- 48
- Source:
- E-TABM-285
- PubMed:
- 17719549
- Updated:
- Dec.12, 2014
- Registered:
- Nov.21, 2014
Factors:
(via ArrayExpress)
| Sample | GrowthCondition | Genotype | StrainOrLine | Time |
|---|---|---|---|---|
| Mus musculus 1 | 12:12-hr light-dark | wild_type | CBA/CaJ | 0.5 |
| Mus musculus 10 | 12:12-hr light-dark | wild_type | CBA/CaJ | 36.5 |
| Mus musculus 11 | 12:12-hr light-dark | wild_type | CBA/CaJ | 40.5 |
| Mus musculus 12 | 12:12-hr light-dark | wild_type | CBA/CaJ | 44.5 |
| Mus musculus 13 | 12:12-hr light-dark | wild_type | CBA/CaJ | 48.5 |
| Mus musculus 14 | 12:12-hr light-dark | wild_type | CBA/CaJ | 52.5 |
| Mus musculus 15 | 12:12-hr light-dark | wild_type | CBA/CaJ | 56.5 |
| Mus musculus 16 | 12:12-hr light-dark | wild_type | CBA/CaJ | 60.5 |
| Mus musculus 17 | 12:12-hr light-dark | wild_type | CBA/CaJ | 64.5 |
| Mus musculus 18 | 12:12-hr light-dark | wild_type | CBA/CaJ | 68.5 |
| Mus musculus 19 | constant darkness | wild_type | CBA/CaJ | 0.5 |
| Mus musculus 2 | 12:12-hr light-dark | wild_type | CBA/CaJ | 4.5 |
| Mus musculus 20 | constant darkness | wild_type | CBA/CaJ | 4.5 |
| Mus musculus 21 | constant darkness | wild_type | CBA/CaJ | 8.5 |
| Mus musculus 22 | constant darkness | wild_type | CBA/CaJ | 12.5 |
| Mus musculus 23 | constant darkness | wild_type | CBA/CaJ | 16.5 |
| Mus musculus 24 | constant darkness | wild_type | CBA/CaJ | 20.5 |
| Mus musculus 25 | constant darkness | wild_type | CBA/CaJ | 24.5 |
| Mus musculus 26 | constant darkness | wild_type | CBA/CaJ | 28.5 |
| Mus musculus 27 | constant darkness | wild_type | CBA/CaJ | 32.5 |
| Mus musculus 28 | constant darkness | wild_type | CBA/CaJ | 36.5 |
| Mus musculus 29 | constant darkness | wild_type | CBA/CaJ | 40.5 |
| Mus musculus 3 | 12:12-hr light-dark | wild_type | CBA/CaJ | 8.5 |
| Mus musculus 30 | constant darkness | wild_type | CBA/CaJ | 44.5 |
| Mus musculus 31 | constant darkness | wild_type | CBA/CaJ | 48.5 |
| Mus musculus 32 | constant darkness | wild_type | CBA/CaJ | 52.5 |
| Mus musculus 33 | constant darkness | wild_type | CBA/CaJ | 56.5 |
| Mus musculus 34 | constant darkness | wild_type | CBA/CaJ | 60.5 |
| Mus musculus 35 | constant darkness | wild_type | CBA/CaJ | 64.5 |
| Mus musculus 36 | constant darkness | wild_type | CBA/CaJ | 68.5 |
| Mus musculus 37 | 12:12-hr light-dark | wild_type | C57BL/6J | 0.5 |
| Mus musculus 38 | 12:12-hr light-dark | wild_type | C57BL/6J | 4.5 |
| Mus musculus 39 | 12:12-hr light-dark | wild_type | C57BL/6J | 8.5 |
| Mus musculus 4 | 12:12-hr light-dark | wild_type | CBA/CaJ | 12.5 |
| Mus musculus 40 | 12:12-hr light-dark | wild_type | C57BL/6J | 12.5 |
| Mus musculus 41 | 12:12-hr light-dark | wild_type | C57BL/6J | 16.5 |
| Mus musculus 42 | 12:12-hr light-dark | wild_type | C57BL/6J | 20.5 |
| Mus musculus 43 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 0.5 |
| Mus musculus 44 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 4.5 |
| Mus musculus 45 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 8.5 |
| Mus musculus 46 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 12.5 |
| Mus musculus 47 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 16.5 |
| Mus musculus 48 | 12:12-hr light-dark | Bmal1-/- | C57BL/6J | 20.5 |
| Mus musculus 5 | 12:12-hr light-dark | wild_type | CBA/CaJ | 16.5 |
| Mus musculus 6 | 12:12-hr light-dark | wild_type | CBA/CaJ | 20.5 |
| Mus musculus 7 | 12:12-hr light-dark | wild_type | CBA/CaJ | 24.5 |
| Mus musculus 8 | 12:12-hr light-dark | wild_type | CBA/CaJ | 28.5 |
| Mus musculus 9 | 12:12-hr light-dark | wild_type | CBA/CaJ | 32.5 |