Dataset: The role of Rif1 in ES cells
Purpose:The goals of this study are to understand the mechanisms underlying reduced self-renewal and loss of pluripotency by depletion of...
Purpose:The goals of this study are to understand the mechanisms underlying reduced self-renewal and loss of pluripotency by depletion of Rif1. Methods: We performed global gene expression analysis of Rif1 knockdown ES cell lines using Affymetrix 430 2.0 arrays, compared to shRNA controls. J1 ES cells were transfected with Control shRNA and Rif1 shRNA using lipofectamine 2000. Forty-eight hours after transfection, cells were collected for global gene expression analysis using Affymetrix mouse genome 430 2.0 array. Stable F1 Rif1 knockdown ES cells at passage 16 were used for long-term gene expression chip microarray using Affymetrix mouse genome 430 2.0 array.
- Species:
- mouse
- Samples:
- 8
- Source:
- E-GEOD-55129
- Updated:
- Dec.12, 2014
- Registered:
- Nov.12, 2014
Sample | BACKGROUND STRAIN | CELL LINE | TRANSFECTION |
---|---|---|---|
GSM1329895 | 129S4/SvJae | J1 ES Cells | control shRNA |
GSM1329895 | 129S4/SvJae | J1 ES Cells | control shRNA |
GSM1329897 | 129S4/SvJae | J1 ES Cells | Rif1 shRNA |
GSM1329897 | 129S4/SvJae | J1 ES Cells | Rif1 shRNA |
GSM1329899 | C57BL/6xC3H | Stable F1 Rif1 knockdown ES cells at passage 16 | control shRNA |
GSM1329899 | C57BL/6xC3H | Stable F1 Rif1 knockdown ES cells at passage 16 | control shRNA |
GSM132990 | C57BL/6xC3H | Stable F1 Rif1 knockdown ES cells at passage 16 | Rif1 shRNA |
GSM132990 | C57BL/6xC3H | Stable F1 Rif1 knockdown ES cells at passage 16 | Rif1 shRNA |