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Home › Dataset Library › The role of Rif1 in ES cells

Dataset: The role of Rif1 in ES cells

Purpose:The goals of this study are to understand the mechanisms underlying reduced self-renewal and loss of pluripotency by depletion of...

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Purpose:The goals of this study are to understand the mechanisms underlying reduced self-renewal and loss of pluripotency by depletion of Rif1. Methods: We performed global gene expression analysis of Rif1 knockdown ES cell lines using Affymetrix 430 2.0 arrays, compared to shRNA controls. J1 ES cells were transfected with Control shRNA and Rif1 shRNA using lipofectamine 2000. Forty-eight hours after transfection, cells were collected for global gene expression analysis using Affymetrix mouse genome 430 2.0 array. Stable F1 Rif1 knockdown ES cells at passage 16 were used for long-term gene expression chip microarray using Affymetrix mouse genome 430 2.0 array.

Species:
mouse

Samples:
8

Source:
E-GEOD-55129

Updated:
Dec.12, 2014

Registered:
Nov.12, 2014


Factors: (via ArrayExpress)
Sample TRANSFECTION CELL LINE BACKGROUND STRAIN
GSM1329895 control shRNA J1 ES Cells 129S4/SvJae
GSM1329895 control shRNA J1 ES Cells 129S4/SvJae
GSM1329897 Rif1 shRNA J1 ES Cells 129S4/SvJae
GSM1329897 Rif1 shRNA J1 ES Cells 129S4/SvJae
GSM1329899 control shRNA Stable F1 Rif1 knockdown ES cells at passage 16 C57BL/6xC3H
GSM1329899 control shRNA Stable F1 Rif1 knockdown ES cells at passage 16 C57BL/6xC3H
GSM132990 Rif1 shRNA Stable F1 Rif1 knockdown ES cells at passage 16 C57BL/6xC3H
GSM132990 Rif1 shRNA Stable F1 Rif1 knockdown ES cells at passage 16 C57BL/6xC3H

Tags

  • cell
  • genome

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