Dataset: Examining efficiency of enrichment of kidney pericyte-specific messages by TRAP (Translating Ribosome Affinity Purification)
The long term goal is to define the transcriptional changes that accompany pericyte-to-myofibroblast transition in fibrotic kidney...
The long term goal is to define the transcriptional changes that accompany pericyte-to-myofibroblast transition in fibrotic kidney disease. Medullary pericytes are identified by their expression of a eGFPL10a fusion protein whose expression is driven by a Col1a1 promoter. Pericyte-specific RNA is generated by eGFP-affinity purification of polysomes from medullary lysates and then subject to microarray analysis. Col1a1-eGFPL10a mice were subject to Sham or unilateral ureteral obstruction surgery. Sham kidneys were collected at day 0, and UUO kidneys were collected at day 2 or day 5 for TRAP.
- Species:
- mouse
- Samples:
- 15
- Source:
- E-GEOD-50439
- Updated:
- Dec.12, 2014
- Registered:
- Nov.12, 2014
Factors:
(via ArrayExpress)
Sample | URL | ORGANISM PART | TIME |
---|---|---|---|
GSM1219324 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21179 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 0 |
GSM1219325 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21180 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 0 |
GSM1219326 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21181 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 0 |
GSM1219327 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21182 | kidney medulla | day 0 |
GSM1219328 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21183 | kidney medulla | day 0 |
GSM1219329 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21184 | kidney medulla | day 0 |
GSM1219330 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21185 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 2 |
GSM121933 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21186 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 2 |
GSM1219332 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21187 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 2 |
GSM1219333 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21188 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 5 |
GSM1219334 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21189 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 5 |
GSM1219335 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21190 | kidney pericytes (periarterial fibroblasts of inner and outer medulla) | day 5 |
GSM1219336 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21191 | kidney medulla | day 5 |
GSM1219337 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21192 | kidney medulla | day 5 |
GSM1219338 | http://www.gudmap.org/gudmap/pages/mic_submission.html?id=GUDMAP:21193 | kidney medulla | day 5 |