Dataset: Genome-wide differential gene expression signatures in pediatric acute lymphoblastic leukemia subtypes
We surveyed the genome-wide DNA methylation levels and gene expression patterns in patients with pediatric acute lymphoblastic leukemia....
We surveyed the genome-wide DNA methylation levels and gene expression patterns in patients with pediatric acute lymphoblastic leukemia. Using Affymetrix U133 Plus 2.0 GeneChips, we identified a relatively small set of CpG sites that are highly correlated with gene expression. Genome-wide expression analysis of 108 primary ALL samples by Affymetrix Human Genome U133 Plus 2.0 GeneChips used to investigate relationships between subtype-specific DNA methylation patterns and gene expression in 93 patients with both gene expression and DNA methylation data.
- Species:
- human
- Samples:
- 108
- Source:
- E-GEOD-47051
- Updated:
- Dec.12, 2014
- Registered:
- Jul.11, 2014
Factors:
(via ArrayExpress)
Sample | TUMOR SUBTYPE | ORGANISM PART |
---|---|---|
GSM1143889 | t(1;19) | bone marrow |
GSM1143888 | NA | Peripheral blood |
GSM1143887 | undefined | bone marrow |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143885 | T-ALL | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143883 | t(12;21) | Peripheral blood |
GSM1143885 | T-ALL | bone marrow |
GSM1143889 | t(1;19) | bone marrow |
GSM1143887 | undefined | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143875 | NA | NA |
GSM1143885 | T-ALL | bone marrow |
GSM1143873 | undefined | Peripheral blood |
GSM1143877 | HeH | bone marrow |
GSM1143875 | NA | NA |
GSM1143875 | NA | NA |
GSM1143869 | 11q23/MLL | Peripheral blood |
GSM1143868 | t(9;22) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143865 | 11q23/MLL | bone marrow |
GSM1143875 | NA | NA |
GSM1143875 | NA | NA |
GSM1143875 | NA | NA |
GSM1143875 | NA | NA |
GSM1143889 | t(1;19) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143853 | NA | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143853 | NA | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143889 | t(1;19) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143868 | t(9;22) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143853 | NA | bone marrow |
GSM1143887 | undefined | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143868 | t(9;22) | bone marrow |
GSM1143889 | t(1;19) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143853 | NA | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143887 | undefined | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143869 | 11q23/MLL | Peripheral blood |
GSM1143885 | T-ALL | bone marrow |
GSM1143853 | NA | bone marrow |
GSM1143884 | t(12;21) | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143873 | undefined | Peripheral blood |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143875 | NA | NA |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143868 | t(9;22) | bone marrow |
GSM1143889 | t(1;19) | bone marrow |
GSM1143865 | 11q23/MLL | bone marrow |
GSM1143885 | T-ALL | bone marrow |
GSM1143856 | dic(9;20) | bone marrow |
GSM1143883 | t(12;21) | Peripheral blood |
GSM1143886 | T-ALL | Peripheral blood |
GSM1143787 | t(9;22) | Peripheral blood |
GSM1143873 | undefined | Peripheral blood |
GSM1143884 | t(12;21) | bone marrow |
GSM1143865 | 11q23/MLL | bone marrow |
GSM1143877 | HeH | bone marrow |
GSM1143875 | NA | NA |