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Home › Dataset Library › Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

Dataset: Comparing three phenotypes: Comparing molecular assessment of implantation biopsy

In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function...

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In deceased donor kidney transplantation, acute kidney injury (AKI) prioir to surgery is a major determinant of delayed graft function (DGF), but AKI is histologically silent and difficult to assess. We hypothesized that a molecular measurement of AKI would add power to conventional risk assessments to predict the early poor allograft function at first week post transplantation. We performed microarrays on implantation biopsies taken during reperfusion in 70 deceased donor kidneys from 53 donors. Early poor function was classified by two definitions on day 7 post-transplantation: serum creatinine greater than 265 umol/L (3 mg/dL) or the requirement for dialysis. Donor age and related risk scores (Irish, Schold, KDRI) associated with worse early function, as expected, but histologic features (glomerulosclerosis; pathology risk scores (Remuzzi, MAPI)) correlated with donor age but not with poor function. However, molecular AKI signal, previously defined in kidneys with early injury, was the best single predictor of poor allograft function. The combination of donor age and the AKI signal improved the prediction of poor function. In addition, asssessments of tissue quality particularly donor age, Banff ct, Irish and KDRI scores, showed negative correlative trend with late graft function, whereas the AKI signal did not. Thus donor age and the molecular AKI signal are the main predictors of early impaired function, but have little impact on survival.

Species:
human

Samples:
78

Source:
E-GEOD-37838

Updated:
Dec.12, 2014

Registered:
Jul.12, 2014


Factors: (via ArrayExpress)
Sample GLOMERULOSCLEROSIS INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION SCHOLD SCORE ORGANISM PART REMUZZI SCORE INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION GEO SAMPLE KDRI DIAGNOSIS GOOD,BAD DGF STATUS MAPI INADEQUATE TISSUE FOR PATHOLOGY INTERPRETATION DONOR AGE IRISH SCORE
GSM928892 not specified not specified nephrectomy not specified GSM880500 not specified nephrectomy nephrectomy not specified not specified not specified
GSM92889 not specified not specified nephrectomy not specified GSM880447 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928890 not specified not specified nephrectomy not specified GSM880430 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928889 not specified not specified nephrectomy not specified GSM880318 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928888 not specified not specified nephrectomy not specified GSM880311 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928887 not specified not specified nephrectomy not specified GSM880299 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928886 not specified not specified nephrectomy not specified GSM880246 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928885 not specified not specified nephrectomy not specified GSM880245 not specified nephrectomy nephrectomy not specified not specified not specified
GSM928884 33.33 0.382 renal allograft biopsy 2 not specified 0.999 good IGF 2 13 9
GSM928883 3.03 0.804 renal allograft biopsy 0 not specified 1.281 good IGF 0 55 16
GSM928882 18.18 1.135 renal allograft biopsy not specified not specified 2.032 bad IGF not specified 68 41
GSM92888 not specified 1.066 renal allograft biopsy 4 not specified 1.528 bad DGF 4 52 43
GSM928880 2.56 0.495 renal allograft biopsy 0 not specified 0.779 good IGF 0 17 16
GSM928879 not specified 0.745 renal allograft biopsy not specified not specified 1.116 good IGF not specified 39 23
GSM928878 8.33 0.451 renal allograft biopsy 4 not specified 0.85 good IGF 4 26 11
GSM928877 3.03 0.765 renal allograft biopsy 0 not specified 1.267 good IGF 0 55 22
GSM928876 0 1.009 renal allograft biopsy 4 not specified 1.187 good IGF 4 53 19
GSM928875 0 0.678 renal allograft biopsy 7 not specified 0.97 good IGF 7 19 6
GSM928874 0 0.644 renal allograft biopsy 7 not specified 0.681 good IGF 7 18 13
GSM928873 not specified 0.922 renal allograft biopsy not specified not specified 1.668 bad DGF not specified 50 40
GSM928872 4.35 0.873 renal allograft biopsy 3 not specified 1.362 bad DGF 3 52 22
GSM92887 0 0.426 renal allograft biopsy not specified not specified 0.756 good IGF not specified 17 8
GSM928870 16.67 0.941 renal allograft biopsy 2 not specified 1.546 bad DGF 2 63 22
GSM928869 0 0.57 renal allograft biopsy 4 not specified 0.952 good IGF 4 22 7
GSM928868 0 0.881 renal allograft biopsy 3 not specified 1.143 bad IGF 3 39 8
GSM928867 50 1.127 renal allograft biopsy not specified not specified 1.639 good IGF not specified 65 36
GSM928866 0 0.495 renal allograft biopsy 0 not specified 0.818 good IGF 0 16 12
GSM928865 0 0.678 renal allograft biopsy 4 not specified 0.93 good IGF 4 25 14
GSM928864 not specified 0.901 renal allograft biopsy 4 not specified 1.426 good IGF 4 54 21
GSM928863 0 0.804 renal allograft biopsy 7 not specified 2.174 good IGF 7 4 19
GSM928862 0 0.737 renal allograft biopsy 3 not specified 1.176 bad DGF 3 54 29
GSM92886 4 0.803 renal allograft biopsy 4 not specified 1.191 good IGF 4 52 15
GSM928860 3.08 1.022 renal allograft biopsy 0 not specified 1.291 good IGF 0 53 11
GSM928859 25 1.011 renal allograft biopsy 6 not specified 1.543 good IGF 6 58 25
GSM928858 0 0.786 renal allograft biopsy 0 not specified 1.302 good IGF 0 43 27
GSM928857 6.4 1.307 renal allograft biopsy 7 not specified 1.743 good IGF 7 69 31
GSM928856 0 0.873 renal allograft biopsy 4 not specified 1.562 good IGF 4 59 31
GSM928855 0 0.791 renal allograft biopsy 4 not specified 1.392 good IGF 4 34 36
GSM928854 6.4 1.354 renal allograft biopsy 4 not specified 2.108 good IGF 4 69 36
GSM928853 12.5 0.583 renal allograft biopsy 7 not specified 1.16 good IGF 7 48 46
GSM928852 0 0.85 renal allograft biopsy 4 not specified 1.311 good IGF 4 42 20
GSM92885 25 0.873 renal allograft biopsy 9 not specified 2.675 good IGF 9 50 34
GSM928850 0 0.589 renal allograft biopsy 0 not specified 1.002 good IGF 0 28 11
GSM928849 11.11 0.747 renal allograft biopsy 0 not specified 1.147 good IGF 0 33 23
GSM928848 16 1.221 renal allograft biopsy 6 not specified 3.991 bad DGF 6 70 35
GSM928847 0 0.382 renal allograft biopsy 4 not specified 1.037 bad DGF 4 13 9
GSM928846 0 0.426 renal allograft biopsy 0 not specified 0.79 good IGF 0 19 18
GSM928845 0 0.804 renal allograft biopsy 4 not specified 1.14 good IGF 4 53 11
GSM928844 not specified 0.917 renal allograft biopsy not specified not specified 1.464 good IGF not specified 59 21
GSM928843 3.33 0.786 renal allograft biopsy 0 not specified 1.097 good IGF 0 43 22
GSM928842 0 0.855 renal allograft biopsy 0 not specified 0.981 bad DGF 0 43 17
GSM92884 16.67 0.431 renal allograft biopsy 2 not specified 1.007 good IGF 2 46 15
GSM928840 0 0.722 renal allograft biopsy not specified not specified 0.755 good IGF not specified 18 22
GSM928839 not specified 1.086 renal allograft biopsy 0 not specified 1.752 bad DGF 0 66 21
GSM928838 0 0.722 renal allograft biopsy 4 not specified 1 good IGF 4 19 17
GSM928837 12.5 0.765 renal allograft biopsy not specified not specified 1.164 good IGF not specified 54 21
GSM928836 0 0.719 renal allograft biopsy 0 not specified 1.191 good IGF 0 43 16
GSM928835 27.27 0.631 renal allograft biopsy 6 not specified 0.812 good IGF 6 23 18
GSM928834 0 1.127 renal allograft biopsy 4 not specified 1.594 bad DGF 4 65 14
GSM928833 8.33 0.687 renal allograft biopsy 0 not specified 0.998 bad DGF 0 52 28
GSM928832 15.79 0.946 renal allograft biopsy 6 not specified 1.243 good IGF 6 43 14
GSM92883 0 0.855 renal allograft biopsy 0 not specified 1.111 bad IGF 0 47 13
GSM928830 11.11 0.719 renal allograft biopsy 3 not specified 1.167 good IGF 3 43 39
GSM928829 18.18 0.92 renal allograft biopsy not specified not specified 1.442 good IGF not specified 52 39
GSM928828 7.14 0.533 renal allograft biopsy 4 not specified 0.968 good IGF 4 46 18
GSM928827 0 0.94 renal allograft biopsy 3 not specified 1.194 bad IGF 3 51 11
GSM928826 0 1.1 renal allograft biopsy 0 not specified 1.497 good IGF 0 56 18
GSM928825 14.29 0.806 renal allograft biopsy 0 not specified 1.265 good IGF 0 55 25
GSM928824 17.74 1.236 renal allograft biopsy 6 not specified 1.711 good IGF 6 52 29
GSM928823 0 0.587 renal allograft biopsy 0 not specified 0.765 good IGF 0 17 8
GSM928822 9.09 0.694 renal allograft biopsy 4 not specified 1.342 good IGF 4 43 14
GSM92882 0 0.384 renal allograft biopsy 3 not specified 0.679 good IGF 3 17 9
GSM928820 0 0.495 renal allograft biopsy 4 not specified 0.867 good IGF 4 16 11
GSM928819 0 0.451 renal allograft biopsy 3 not specified 0.758 good IGF 3 23 13
GSM928818 0 0.6 renal allograft biopsy 0 not specified 0.84 good IGF 0 22 11
GSM928817 0 1.144 renal allograft biopsy not specified not specified 1.524 bad DGF not specified 51 30
GSM928816 0 1.144 renal allograft biopsy not specified not specified 1.516 bad IGF not specified 53 33
GSM928815 not specified 0.806 renal allograft biopsy not specified not specified 1.351 good IGF not specified 59 19

Tags

  • glomerulosclerosis
  • kidney
  • serum

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