BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Gene expression profiles of triple-negative breast cancer cells under the condition of 3D proliferation

Dataset: Gene expression profiles of triple-negative breast cancer cells under the condition of 3D proliferation

Triple-negative breast cancer (TNBC) is defined by the absence of estrogen and progesterone receptors and human epidermal growth factor...

Registered by ArrayExpress Uploader
View Dataset

Triple-negative breast cancer (TNBC) is defined by the absence of estrogen and progesterone receptors and human epidermal growth factor receptor 2, and is the most lethal and aggressive subtype of breast cancer. However, the genes which relate to promote tumor aggressiveness in TNBC remain unclear. In order to investigate specific genes and pathways involved in TNBC tumorigenesis, we compared genes differentially expressed between 3D cultures (3DC) or tumor xenograft models and control two-dimensional cultures (2DC). Total RNA was prepared from the TNBC cells under the condition of 2DC, 3DC and tumor xenograft models, and applied to Affymetrix Human Genome U133 Plus 2.0 Array.

Species:
human

Samples:
6

Source:
E-GEOD-36953

Updated:
Dec.12, 2014

Registered:
Sep.19, 2014


Factors: (via ArrayExpress)
Sample DISEASE STATE GROWTH CONDITION CELL LINE
GSM907019 breast adenocarcinoma (derived from metastatic site: pleural effusion) control two-dimensional cultures (2DC) TNBC cell line MDA-MB-231
GSM907020 breast adenocarcinoma (derived from metastatic site: pleural effusion) 3D cultures (3DC) TNBC cell line MDA-MB-231
GSM90702 breast adenocarcinoma (derived from metastatic site: pleural effusion) tumor xenograft model TNBC cell line MDA-MB-231
GSM907022 breast carcinoma control two-dimensional cultures (2DC) TNBC cell line Hs578T
GSM907023 breast carcinoma 3D cultures (3DC) TNBC cell line Hs578T
GSM907024 breast carcinoma tumor xenograft model TNBC cell line Hs578T

Tags

  • breast
  • breast cancer
  • cancer
  • estrogen
  • genome

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2025 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use