Dataset: Gene expression profiles of triple-negative breast cancer cells under the condition of 3D proliferation
Triple-negative breast cancer (TNBC) is defined by the absence of estrogen and progesterone receptors and human epidermal growth factor...
Triple-negative breast cancer (TNBC) is defined by the absence of estrogen and progesterone receptors and human epidermal growth factor receptor 2, and is the most lethal and aggressive subtype of breast cancer. However, the genes which relate to promote tumor aggressiveness in TNBC remain unclear. In order to investigate specific genes and pathways involved in TNBC tumorigenesis, we compared genes differentially expressed between 3D cultures (3DC) or tumor xenograft models and control two-dimensional cultures (2DC). Total RNA was prepared from the TNBC cells under the condition of 2DC, 3DC and tumor xenograft models, and applied to Affymetrix Human Genome U133 Plus 2.0 Array.
- Species:
- human
- Samples:
- 6
- Source:
- E-GEOD-36953
- Updated:
- Dec.12, 2014
- Registered:
- Sep.19, 2014
Sample | DISEASE STATE | GROWTH CONDITION | CELL LINE |
---|---|---|---|
GSM907019 | breast adenocarcinoma (derived from metastatic site: pleural effusion) | control two-dimensional cultures (2DC) | TNBC cell line MDA-MB-231 |
GSM907020 | breast adenocarcinoma (derived from metastatic site: pleural effusion) | 3D cultures (3DC) | TNBC cell line MDA-MB-231 |
GSM90702 | breast adenocarcinoma (derived from metastatic site: pleural effusion) | tumor xenograft model | TNBC cell line MDA-MB-231 |
GSM907022 | breast carcinoma | control two-dimensional cultures (2DC) | TNBC cell line Hs578T |
GSM907023 | breast carcinoma | 3D cultures (3DC) | TNBC cell line Hs578T |
GSM907024 | breast carcinoma | tumor xenograft model | TNBC cell line Hs578T |