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Home › Dataset Library › Arsenate Sub-chronic Drinking Water Study

Dataset: Arsenate Sub-chronic Drinking Water Study

Concentration- and time-dependent genomic changes in the mouse urinary bladder following exposure to arsenate in drinking water for up to...

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Concentration- and time-dependent genomic changes in the mouse urinary bladder following exposure to arsenate in drinking water for up to twelve weeks. Inorganic arsenic (Asi) is a known human bladder carcinogen. The objective of this study was to examine the concentration dependence of the genomic response to Asi in the urinary bladders of mice. C57BL/6J mice were exposed for 1 or 12 weeks to arsenate in drinking water at concentrations of 0.5, 2, 10, and 50 mg As/L. Urinary bladders were analyzed using gene expression microarrays. A consistent reversal was observed in the direction of gene expression change: from predominantly decreased expression at 1 week to predominantly increased expression at 12 weeks. These results are consistent with evidence from in vitro studies of an acute adaptive response that is suppressed on longer exposure due to down-regulation of Fos. Pathways with the highest enrichment in gene expression changes were associated with epithelial-to-mesenchymal transition, inflammation, and proliferation. Benchmark dose (BMD) analysis determined that the lowest median BMD values for pathways were above 5 mg As/L, despite the fact that pathway enrichment was observed at the 0.5 mg As/L exposure concentration. This disparity may result from the non-monotonic nature of the concentration-responses for the expression changes of a number of genes, as evidenced by the much fewer gene expression changes at 2 mg As/L compared to lower or higher concentrations. Pathway categories with concentration-related gene expression changes included cellular morphogenesis, inflammation, apoptosis/survival, cell cycle control, and DNA damage response. The results of this study provide evidence of a concentration-dependent transition in the mode of action for the subchronic effects of Asi in mouse bladder cells in the vicinity of 2 mg Asi/L. Female C57Bl/J mice will be exposed to COLD Arsenate in drinking water. One week interium sac on 7/18/06. 100 samples including liver, lung, kidney and bladder. Bladder will be analyzed with microarrays, 24 samples. Twelve week terminal sac on 10/05/06. 75 total samples including lung, kidney, and bladder. Bladdler will be analyzed by microarray, 25 samples. Drinking water containing As will be prepared weekly with monitoring to determine amount used by mice. Following tissues will be available for genomic study: Bladder, liver, lung, and kidney.

Species:
mouse

Samples:
49

Source:
E-GEOD-32102

Updated:
Dec.12, 2014

Registered:
Nov.11, 2014


Factors: (via ArrayExpress)
Sample RATIO RNA INTEGRITY NUMBER AGE OD260 INDIVIDUAL OD280 BIOANALYZER RESULTS
GSM795653 1.98 9.4 155 1.805 7-1 0.894 excellent
GSM795654 1.96 9.5 155 2.035 7-2 1.015 excellent
GSM795655 1.95 9.5 155 2.039 7-3 0.915 excellent
GSM795656 1.96 9.3 155 2.71 7-4 1.374 excellent
GSM795657 1.95 9.5 155 1.996 7-5 1.006 excellent
GSM795658 1.88 8.9 76 1.262 8-2 0.661 good
GSM795659 1.98 9.5 76 1.045 8-3 0.512 excellent
GSM795660 1.89 9.2 76 1.618 8-4 0.904 excellent
GSM79566 1.8 9.4 76 1.238 8-5 0.778 excellent
GSM795662 1.95 9.4 155 2.127 4-1 1.085 excellent
GSM795663 1.91 9.7 155 2.385 4-2 1.35 excellent
GSM795664 1.95 9.6 155 2.265 4-3 1.157 excellent
GSM795665 1.96 9.6 155 2.299 4-4 1.184 excellent
GSM795666 1.95 9.6 155 2.21 4-5 1.118 excellent
GSM795667 1.92 9.7 76 1.119 3-1 0.573 excellent
GSM795668 1.85 9.3 76 1.648 3-2 0.934 excellent
GSM795669 1.91 8.8 76 1.452 3-3 0.764 good
GSM795670 1.93 9.4 76 1.193 3-4 0.611 excellent
GSM79567 1.9 9.2 76 1.816 3-5 0.959 excellent
GSM795672 1.91 9.8 155 0.932 15-1 0.488 excellent
GSM795673 1.95 9.5 155 1.79 15-2 0.909 excellent
GSM795674 1.94 9.7 155 1.311 15-3 0.692 excellent
GSM795675 1.94 9.6 155 1.073 15-4 0.548 excellent
GSM795676 1.96 9.6 155 1.367 15-5 0.698 excellent
GSM795677 1.92 not specified 76 1.197 16-1 0.612 good
GSM795678 1.95 not specified 76 1.374 16-2 0.709 excellent
GSM795679 1.93 8.4 76 1.723 16-3 0.879 good
GSM795680 1.91 8.5 76 1.399 16-4 0.725 good
GSM79568 1.94 9.3 76 1.599 16-5 0.811 excellent
GSM795682 1.97 9.6 155 2.267 12-1 1.146 excellent
GSM795683 1.936 9.8 155 1.844 12-2 0.96 excellent
GSM795684 1.96 9.6 155 2.793 12-3 1.41 excellent
GSM795685 1.97 9.6 155 3.028 12-4 1.539 excellent
GSM795686 1.97 9.6 155 2.282 12-5 1.157 excellent
GSM795687 1.94 9.7 76 1.567 11-1 0.85 excellent
GSM795688 not specified 9.5 76 7.188 11-2 3.535 excellent
GSM795689 1.85 7.2 76 1.722 11-3 0.982 good
GSM795690 1.93 7.2 76 1.307 11-4 0.67 good
GSM79569 1.91 7.2 76 2.302 11-5 1.268 good
GSM795692 1.94 9.4 155 1.695 20-1 0.866 excellent
GSM795693 1.94 9.6 155 1.763 20-2 0.93 excellent
GSM795694 1.88 9.3 155 1.937 20-3 1.102 excellent
GSM795695 1.94 9.6 155 1.582 20-4 0.819 excellent
GSM795696 1.84 9.7 155 1.057 20-5 0.631 excellent
GSM795697 1.98 9.1 76 1.834 19-1 0.916 excellent
GSM795698 1.89 9.4 76 1.042 19-2 0.55 excellent
GSM795699 1.94 9.5 76 1.733 19-3 0.898 excellent
GSM795700 1.98 9.7 76 2.014 19-4 1.008 excellent
GSM79570 1.97 9.2 76 6.386 19-5 3.206 excellent

Tags

  • cell
  • kidney
  • liver
  • lung
  • median
  • urinary bladder

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