BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › MSKCC-A Primary Lung Cancer Specimens

Dataset: MSKCC-A Primary Lung Cancer Specimens

Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated...

Registered by ArrayExpress Uploader
View Dataset

Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated with the EGFR-dependent phenotype 30 primary lung adenocarcinomas and 20 adjacent normal lung controls were analyzed with Affymetrix U133A

Species:
human

Samples:
50

Source:
E-GEOD-31547

Updated:
Dec.12, 2014

Registered:
Jun.18, 2014


Factors: (via ArrayExpress)
Sample DEATH_IND AGE WHO HISTOLOGIC SUBTYPE PT RECDTE1 LAST F/U SEX RACE SMOKING PACK YRS PN MSKCC HISTOLOGY STATUS SURGDTE/TB_DATE DEATHDTE INTREC1 TUMORSITE RECTYPE1 WHO GRADE CT INTSTAT GRPSTAGE OTHER TIME QUIT (@ INITIAL CONSULT) EGFR STATUS
GSM783027 not specified 74 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783024 not specified not specified not specified not specified not specified not specified F not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM78302 not specified 49 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783020 not specified 76 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783015 not specified 74 not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783014 not specified 62 not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783013 not specified 52 not specified not specified not specified not specified F WNH Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783010 not specified not specified not specified not specified not specified not specified M not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783009 not specified 65 not specified not specified not specified not specified F WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783007 A 69 ACI 1 not specified 2002-03-22 M WNH Never 0 2 ACA NED 1999-05-11 not specified not specified LungTumor not specified MD not specified 34 3A not specified not specified Wild-type
GSM783006 D 79 ACI, BAC 1 36032 1998-12-18 F WNH Never 0 1 AWBF DOD 1998-02-12 36147 6 LungTumor Brain ?? temporal lobe MD not specified 10 2A not specified not specified Mutant
GSM783005 A 74 ACI 2 37412 2004-06-10 F WNH Never 0 1 ACA AWD 2000-04-28 not specified 26 LtLungTumor pleura MD T1 50 2B not specified not specified Mutant
GSM783004 A 63 BAC, ACI 1 not specified 2004-05-10 F WNH Never 0 0 BWFI NED 2000-10-03 not specified not specified RtLungTumor not specified WD not specified 44 1A 2nd hand smoke exposure not specified Mutant
GSM783003 D 51 ACI, BAC 1 33557 1993-04-21 F WNH UNK UNK 1 AWBF DOD 1993-01-15 34080 7 (L) Upper Lobe Bone-rib MD not specified 3 1A Not available not specified Wild-type
GSM783002 A 64 ACI 1 not specified 2004-03-08 F WNH Former 40 2 ACA DOC 2001-06-04 38054 not specified LungTumor,LtUpper not specified MD not specified not specified 3A not specified 1-6mos Wild-type
GSM78300 A 70 ACI 2 36978 2004-06-23 F BNH Former 5 0 ACA NED 2000-10-18 not specified 5 LtLungTumor Left Suprahilar region MD TX 44 1B not specified 6-10yrs Mutant
GSM783000 D 48 ACI, BAC 1 36960 2003-01-07 F WNH Former 3 2 AWBF DOD 1998-10-12 37628 29 LtLungTumor brain MD not specified 51 3A not specified >10yrs Mutant
GSM782999 A 74 SOL 2 not specified 2003-06-24 F WNH Current 50 1 ACA NED 1999-12-15 not specified not specified LtLungTumor not specified PD not specified 42 2B Quit by OR 0 Wild-type
GSM782998 A 61 ACI, BAC 2 37459 2003-10-07 M WNH Former 5 0 AWBF NED 2000-05-03 not specified 26 LungTumor Lung-RLL MD not specified 41 1B not specified >10yrs Mutant
GSM782997 D 53 SOL 2 37138 2002-04-15 F WNH Former 123 1 ACA DOD 2000-08-31 37361 13 RtLungTumor Peripancreatic PD not specified 20 2B not specified 6-12mos Wild-type
GSM782996 A 53 BAC, ACI 1 not specified 2003-04-15 F WNH Never 0 0 BWFI NED 2000-04-11 not specified not specified RtLungTumor not specified WD not specified 36 1A 2nd hand smoke exposure not specified Mutant
GSM782995 A 69 SOL 2 not specified 2004-06-23 F WNH Former UNK 0 ACA NED 1999-06-23 not specified not specified LungTumor not specified PD not specified 60 1B UNK if quit by OR, Pipe 0 Wild-type
GSM782994 A 50 ACI 2 37529 2003-12-27 F WNH Former 10 2 ACA DOD 2000-06-13 not specified 27 LtLungTumor ?? Posterior chest wall MD not specified 42 3A not specified >10yrs Mutant
GSM782993 A 51 BAC,ACI 2 not specified 2003-03-01 M WNH Never 0 1 BWFI NED 1999-01-11 not specified not specified RtLungTumor not specified WD not specified 50 2B not specified not specified Wild-type
GSM782992 A 46 ACI 1 not specified 2002-03-08 F WNH Former 80 0 ACA NED 1998-12-14 not specified not specified RtLungTumor not specified MD not specified 39 1A not specified 1-4wks Wild-type
GSM78299 A 49 BAC, ACI 1 not specified 2003-06-25 F WNH Never 0 0 BWFI NED 1996-01-16 not specified not specified LtLungTumo not specified WD not specified 89 1A not specified not specified Mutant
GSM782990 A 76 BAC,ACI 1 not specified 2004-08-23 F WNH Never 0 0 BWFI NED 2001-07-12 not specified not specified LungTumor,LtUpper not specified MD not specified 37 1A not specified not specified Mutant
GSM782989 A 57 BAC, ACI 2 not specified 2000-10-03 F WNH Former 37 0 BWFI NED 1996-11-25 not specified not specified RtLungTumor not specified WD not specified 47 1B not specified UNK Mutant
GSM782988 D 67 BAC,ACI 1 37204 2002-10-12 M WNH Never 0 1 BWFI DOD 2000-02-02 37541 21 RtLungTumor pleura MD not specified 32 2A Cigar not specified Mutant
GSM782987 D 70 ACI 2 36973 2001-10-22 M WNH Former 82 1 ACA DOD 2000-02-16 37186 13 LtLungTumor mediastinum MD not specified 20 2B Asbestos exposure 6-10yrs Wild-type
GSM782986 D 58 ACI 2 not specified 1998-05-30 F WNH Former 45 0 ACA DOC 1998-05-18 35945 not specified LtLungTumor not specified PD not specified 0 1B not specified >10yrs Wild-type
GSM782985 A 74 BAC,ACI 2 37734 2003-08-23 M WNH Former 154 0 BWFI AWD 2000-01-17 not specified 39 RtLungTumor Pleura-Rt. Parietal WD not specified 43 1B Cigar >10yrs Mutant
GSM782984 A 50 ACI, BAC 1 not specified 2001-07-05 F WNH Current 45 0 AWBF NED 2000-04-24 not specified not specified RtLungTumor not specified MD not specified 15 1A Quit by OR 0 Wild-type
GSM782983 A 62 BAC, ACI 2 not specified 2000-02-03 M WNH Former 20 0 BWFI NED 1997-05-20 not specified not specified RtLungTumor not specified MD not specified 33 1B not specified 6-10yrs Wild-type
GSM782982 D 52 ACI, SOL 2 36594 2000-09-28 F WNH Current 52.5 2 ACA DOD 1999-07-19 36797 8 LtLungTumor Adrenal MD, PD not specified 14 3A Quit by OR 0 Wild-type
GSM78298 A 68 BAC, ACI 2 37347 2003-03-05 M WNH Former 80 0 BWFI AWD 1999-03-09 not specified 37 RtLungTumor Lt. Adrenal MD not specified 48 1B not specified 6-10yrs Wild-type
GSM782980 D 48 PAP, BAC 2 33715 1993-06-03 F WNH UNK UNK 1 AWBF DOD 1991-09-03 34123 7 ?? Upper Lobe ?? Pleura, ?? Hemidiaphragm MD not specified 21 2 Not available not specified Mutant
GSM782979 A 65 BAC, ACI 1 not specified 2003-09-10 F WNH Former 34.5 0 BWFI NED 2000-06-29 not specified not specified RtLungTumor not specified WD not specified 39 1A not specified >10yrs Wild-type
GSM782978 A 70 BAC (M, NM) 1 not specified 2002-12-10 F WNH Former 20 0 PBAC NED 1999-01-13 not specified not specified LtLungTumor not specified WD not specified 47 1A not specified >10yrs Wild-type

Tags

  • adenocarcinomas
  • lung

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2026 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use