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Home › Dataset Library › MSKCC-A Primary Lung Cancer Specimens

Dataset: MSKCC-A Primary Lung Cancer Specimens

Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated...

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Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated with the EGFR-dependent phenotype 30 primary lung adenocarcinomas and 20 adjacent normal lung controls were analyzed with Affymetrix U133A

Species:
human

Samples:
50

Source:
E-GEOD-31547

Updated:
Dec.12, 2014

Registered:
Jun.18, 2014


Factors: (via ArrayExpress)
Sample GRPSTAGE AGE WHO HISTOLOGIC SUBTYPE SURGDTE/TB_DATE PT RECDTE1 LAST F/U SEX RACE SMOKING CT PN MSKCC HISTOLOGY STATUS DEATH_IND DEATHDTE OTHER TUMORSITE RECTYPE1 WHO GRADE PACK YRS INTSTAT INTREC1 TIME QUIT (@ INITIAL CONSULT) EGFR STATUS
GSM783027 not specified 74 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783024 not specified not specified not specified not specified not specified not specified not specified F not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM78302 not specified 49 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783020 not specified 76 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783015 not specified 74 not specified not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783014 not specified 62 not specified not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783013 not specified 52 not specified not specified not specified not specified not specified F WNH Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783010 not specified not specified not specified not specified not specified not specified not specified M not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783009 not specified 65 not specified not specified not specified not specified not specified F WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783007 3A 69 ACI 1999-05-11 1 not specified 2002-03-22 M WNH Never not specified 2 ACA NED A not specified not specified LungTumor not specified MD 0 34 not specified not specified Wild-type
GSM783006 2A 79 ACI, BAC 1998-02-12 1 36032 1998-12-18 F WNH Never not specified 1 AWBF DOD D 36147 not specified LungTumor Brain ?? temporal lobe MD 0 10 6 not specified Mutant
GSM783005 2B 74 ACI 2000-04-28 2 37412 2004-06-10 F WNH Never T1 1 ACA AWD A not specified not specified LtLungTumor pleura MD 0 50 26 not specified Mutant
GSM783004 1A 63 BAC, ACI 2000-10-03 1 not specified 2004-05-10 F WNH Never not specified 0 BWFI NED A not specified 2nd hand smoke exposure RtLungTumor not specified WD 0 44 not specified not specified Mutant
GSM783003 1A 51 ACI, BAC 1993-01-15 1 33557 1993-04-21 F WNH UNK not specified 1 AWBF DOD D 34080 Not available (L) Upper Lobe Bone-rib MD UNK 3 7 not specified Wild-type
GSM783002 3A 64 ACI 2001-06-04 1 not specified 2004-03-08 F WNH Former not specified 2 ACA DOC A 38054 not specified LungTumor,LtUpper not specified MD 40 not specified not specified 1-6mos Wild-type
GSM78300 1B 70 ACI 2000-10-18 2 36978 2004-06-23 F BNH Former TX 0 ACA NED A not specified not specified LtLungTumor Left Suprahilar region MD 5 44 5 6-10yrs Mutant
GSM783000 3A 48 ACI, BAC 1998-10-12 1 36960 2003-01-07 F WNH Former not specified 2 AWBF DOD D 37628 not specified LtLungTumor brain MD 3 51 29 >10yrs Mutant
GSM782999 2B 74 SOL 1999-12-15 2 not specified 2003-06-24 F WNH Current not specified 1 ACA NED A not specified Quit by OR LtLungTumor not specified PD 50 42 not specified 0 Wild-type
GSM782998 1B 61 ACI, BAC 2000-05-03 2 37459 2003-10-07 M WNH Former not specified 0 AWBF NED A not specified not specified LungTumor Lung-RLL MD 5 41 26 >10yrs Mutant
GSM782997 2B 53 SOL 2000-08-31 2 37138 2002-04-15 F WNH Former not specified 1 ACA DOD D 37361 not specified RtLungTumor Peripancreatic PD 123 20 13 6-12mos Wild-type
GSM782996 1A 53 BAC, ACI 2000-04-11 1 not specified 2003-04-15 F WNH Never not specified 0 BWFI NED A not specified 2nd hand smoke exposure RtLungTumor not specified WD 0 36 not specified not specified Mutant
GSM782995 1B 69 SOL 1999-06-23 2 not specified 2004-06-23 F WNH Former not specified 0 ACA NED A not specified UNK if quit by OR, Pipe LungTumor not specified PD UNK 60 not specified 0 Wild-type
GSM782994 3A 50 ACI 2000-06-13 2 37529 2003-12-27 F WNH Former not specified 2 ACA DOD A not specified not specified LtLungTumor ?? Posterior chest wall MD 10 42 27 >10yrs Mutant
GSM782993 2B 51 BAC,ACI 1999-01-11 2 not specified 2003-03-01 M WNH Never not specified 1 BWFI NED A not specified not specified RtLungTumor not specified WD 0 50 not specified not specified Wild-type
GSM782992 1A 46 ACI 1998-12-14 1 not specified 2002-03-08 F WNH Former not specified 0 ACA NED A not specified not specified RtLungTumor not specified MD 80 39 not specified 1-4wks Wild-type
GSM78299 1A 49 BAC, ACI 1996-01-16 1 not specified 2003-06-25 F WNH Never not specified 0 BWFI NED A not specified not specified LtLungTumo not specified WD 0 89 not specified not specified Mutant
GSM782990 1A 76 BAC,ACI 2001-07-12 1 not specified 2004-08-23 F WNH Never not specified 0 BWFI NED A not specified not specified LungTumor,LtUpper not specified MD 0 37 not specified not specified Mutant
GSM782989 1B 57 BAC, ACI 1996-11-25 2 not specified 2000-10-03 F WNH Former not specified 0 BWFI NED A not specified not specified RtLungTumor not specified WD 37 47 not specified UNK Mutant
GSM782988 2A 67 BAC,ACI 2000-02-02 1 37204 2002-10-12 M WNH Never not specified 1 BWFI DOD D 37541 Cigar RtLungTumor pleura MD 0 32 21 not specified Mutant
GSM782987 2B 70 ACI 2000-02-16 2 36973 2001-10-22 M WNH Former not specified 1 ACA DOD D 37186 Asbestos exposure LtLungTumor mediastinum MD 82 20 13 6-10yrs Wild-type
GSM782986 1B 58 ACI 1998-05-18 2 not specified 1998-05-30 F WNH Former not specified 0 ACA DOC D 35945 not specified LtLungTumor not specified PD 45 0 not specified >10yrs Wild-type
GSM782985 1B 74 BAC,ACI 2000-01-17 2 37734 2003-08-23 M WNH Former not specified 0 BWFI AWD A not specified Cigar RtLungTumor Pleura-Rt. Parietal WD 154 43 39 >10yrs Mutant
GSM782984 1A 50 ACI, BAC 2000-04-24 1 not specified 2001-07-05 F WNH Current not specified 0 AWBF NED A not specified Quit by OR RtLungTumor not specified MD 45 15 not specified 0 Wild-type
GSM782983 1B 62 BAC, ACI 1997-05-20 2 not specified 2000-02-03 M WNH Former not specified 0 BWFI NED A not specified not specified RtLungTumor not specified MD 20 33 not specified 6-10yrs Wild-type
GSM782982 3A 52 ACI, SOL 1999-07-19 2 36594 2000-09-28 F WNH Current not specified 2 ACA DOD D 36797 Quit by OR LtLungTumor Adrenal MD, PD 52.5 14 8 0 Wild-type
GSM78298 1B 68 BAC, ACI 1999-03-09 2 37347 2003-03-05 M WNH Former not specified 0 BWFI AWD A not specified not specified RtLungTumor Lt. Adrenal MD 80 48 37 6-10yrs Wild-type
GSM782980 2 48 PAP, BAC 1991-09-03 2 33715 1993-06-03 F WNH UNK not specified 1 AWBF DOD D 34123 Not available ?? Upper Lobe ?? Pleura, ?? Hemidiaphragm MD UNK 21 7 not specified Mutant
GSM782979 1A 65 BAC, ACI 2000-06-29 1 not specified 2003-09-10 F WNH Former not specified 0 BWFI NED A not specified not specified RtLungTumor not specified WD 34.5 39 not specified >10yrs Wild-type
GSM782978 1A 70 BAC (M, NM) 1999-01-13 1 not specified 2002-12-10 F WNH Former not specified 0 PBAC NED A not specified not specified LtLungTumor not specified WD 20 47 not specified >10yrs Wild-type

Tags

  • adenocarcinomas
  • lung

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