Dataset: MSKCC-A Primary Lung Cancer Specimens
Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated...
Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated with the EGFR-dependent phenotype 30 primary lung adenocarcinomas and 20 adjacent normal lung controls were analyzed with Affymetrix U133A
- Species:
- human
- Samples:
- 50
- Source:
- E-GEOD-31547
- Updated:
- Dec.12, 2014
- Registered:
- Jun.18, 2014
Factors:
(via ArrayExpress)
Sample | DEATH_IND | AGE | WHO HISTOLOGIC SUBTYPE | PT | RECDTE1 | LAST F/U | SEX | RACE | SMOKING | CT | PN | MSKCC HISTOLOGY | STATUS | SURGDTE/TB_DATE | DEATHDTE | INTREC1 | TUMORSITE | RECTYPE1 | WHO GRADE | PACK YRS | INTSTAT | GRPSTAGE | OTHER | TIME QUIT (@ INITIAL CONSULT) | EGFR STATUS |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSM783027 | not specified | 74 | not specified | not specified | not specified | not specified | F | WNH | Never | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783024 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Current | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM78302 | not specified | 49 | not specified | not specified | not specified | not specified | F | WNH | Never | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783020 | not specified | 76 | not specified | not specified | not specified | not specified | F | WNH | Never | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783019 | not specified | not specified | not specified | not specified | not specified | not specified | M | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783018 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Never | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783019 | not specified | not specified | not specified | not specified | not specified | not specified | M | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783015 | not specified | 74 | not specified | not specified | not specified | not specified | M | WNH | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783014 | not specified | 62 | not specified | not specified | not specified | not specified | M | WNH | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783013 | not specified | 52 | not specified | not specified | not specified | not specified | F | WNH | Current | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783019 | not specified | not specified | not specified | not specified | not specified | not specified | M | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783026 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783010 | not specified | not specified | not specified | not specified | not specified | not specified | M | not specified | Current | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783009 | not specified | 65 | not specified | not specified | not specified | not specified | F | WNH | Former | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783018 | not specified | not specified | not specified | not specified | not specified | not specified | F | not specified | Never | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | not specified | Wild-type |
GSM783007 | A | 69 | ACI | 1 | not specified | 2002-03-22 | M | WNH | Never | not specified | 2 | ACA | NED | 1999-05-11 | not specified | not specified | LungTumor | not specified | MD | 0 | 34 | 3A | not specified | not specified | Wild-type |
GSM783006 | D | 79 | ACI, BAC | 1 | 36032 | 1998-12-18 | F | WNH | Never | not specified | 1 | AWBF | DOD | 1998-02-12 | 36147 | 6 | LungTumor | Brain ?? temporal lobe | MD | 0 | 10 | 2A | not specified | not specified | Mutant |
GSM783005 | A | 74 | ACI | 2 | 37412 | 2004-06-10 | F | WNH | Never | T1 | 1 | ACA | AWD | 2000-04-28 | not specified | 26 | LtLungTumor | pleura | MD | 0 | 50 | 2B | not specified | not specified | Mutant |
GSM783004 | A | 63 | BAC, ACI | 1 | not specified | 2004-05-10 | F | WNH | Never | not specified | 0 | BWFI | NED | 2000-10-03 | not specified | not specified | RtLungTumor | not specified | WD | 0 | 44 | 1A | 2nd hand smoke exposure | not specified | Mutant |
GSM783003 | D | 51 | ACI, BAC | 1 | 33557 | 1993-04-21 | F | WNH | UNK | not specified | 1 | AWBF | DOD | 1993-01-15 | 34080 | 7 | (L) Upper Lobe | Bone-rib | MD | UNK | 3 | 1A | Not available | not specified | Wild-type |
GSM783002 | A | 64 | ACI | 1 | not specified | 2004-03-08 | F | WNH | Former | not specified | 2 | ACA | DOC | 2001-06-04 | 38054 | not specified | LungTumor,LtUpper | not specified | MD | 40 | not specified | 3A | not specified | 1-6mos | Wild-type |
GSM78300 | A | 70 | ACI | 2 | 36978 | 2004-06-23 | F | BNH | Former | TX | 0 | ACA | NED | 2000-10-18 | not specified | 5 | LtLungTumor | Left Suprahilar region | MD | 5 | 44 | 1B | not specified | 6-10yrs | Mutant |
GSM783000 | D | 48 | ACI, BAC | 1 | 36960 | 2003-01-07 | F | WNH | Former | not specified | 2 | AWBF | DOD | 1998-10-12 | 37628 | 29 | LtLungTumor | brain | MD | 3 | 51 | 3A | not specified | >10yrs | Mutant |
GSM782999 | A | 74 | SOL | 2 | not specified | 2003-06-24 | F | WNH | Current | not specified | 1 | ACA | NED | 1999-12-15 | not specified | not specified | LtLungTumor | not specified | PD | 50 | 42 | 2B | Quit by OR | 0 | Wild-type |
GSM782998 | A | 61 | ACI, BAC | 2 | 37459 | 2003-10-07 | M | WNH | Former | not specified | 0 | AWBF | NED | 2000-05-03 | not specified | 26 | LungTumor | Lung-RLL | MD | 5 | 41 | 1B | not specified | >10yrs | Mutant |
GSM782997 | D | 53 | SOL | 2 | 37138 | 2002-04-15 | F | WNH | Former | not specified | 1 | ACA | DOD | 2000-08-31 | 37361 | 13 | RtLungTumor | Peripancreatic | PD | 123 | 20 | 2B | not specified | 6-12mos | Wild-type |
GSM782996 | A | 53 | BAC, ACI | 1 | not specified | 2003-04-15 | F | WNH | Never | not specified | 0 | BWFI | NED | 2000-04-11 | not specified | not specified | RtLungTumor | not specified | WD | 0 | 36 | 1A | 2nd hand smoke exposure | not specified | Mutant |
GSM782995 | A | 69 | SOL | 2 | not specified | 2004-06-23 | F | WNH | Former | not specified | 0 | ACA | NED | 1999-06-23 | not specified | not specified | LungTumor | not specified | PD | UNK | 60 | 1B | UNK if quit by OR, Pipe | 0 | Wild-type |
GSM782994 | A | 50 | ACI | 2 | 37529 | 2003-12-27 | F | WNH | Former | not specified | 2 | ACA | DOD | 2000-06-13 | not specified | 27 | LtLungTumor | ?? Posterior chest wall | MD | 10 | 42 | 3A | not specified | >10yrs | Mutant |
GSM782993 | A | 51 | BAC,ACI | 2 | not specified | 2003-03-01 | M | WNH | Never | not specified | 1 | BWFI | NED | 1999-01-11 | not specified | not specified | RtLungTumor | not specified | WD | 0 | 50 | 2B | not specified | not specified | Wild-type |
GSM782992 | A | 46 | ACI | 1 | not specified | 2002-03-08 | F | WNH | Former | not specified | 0 | ACA | NED | 1998-12-14 | not specified | not specified | RtLungTumor | not specified | MD | 80 | 39 | 1A | not specified | 1-4wks | Wild-type |
GSM78299 | A | 49 | BAC, ACI | 1 | not specified | 2003-06-25 | F | WNH | Never | not specified | 0 | BWFI | NED | 1996-01-16 | not specified | not specified | LtLungTumo | not specified | WD | 0 | 89 | 1A | not specified | not specified | Mutant |
GSM782990 | A | 76 | BAC,ACI | 1 | not specified | 2004-08-23 | F | WNH | Never | not specified | 0 | BWFI | NED | 2001-07-12 | not specified | not specified | LungTumor,LtUpper | not specified | MD | 0 | 37 | 1A | not specified | not specified | Mutant |
GSM782989 | A | 57 | BAC, ACI | 2 | not specified | 2000-10-03 | F | WNH | Former | not specified | 0 | BWFI | NED | 1996-11-25 | not specified | not specified | RtLungTumor | not specified | WD | 37 | 47 | 1B | not specified | UNK | Mutant |
GSM782988 | D | 67 | BAC,ACI | 1 | 37204 | 2002-10-12 | M | WNH | Never | not specified | 1 | BWFI | DOD | 2000-02-02 | 37541 | 21 | RtLungTumor | pleura | MD | 0 | 32 | 2A | Cigar | not specified | Mutant |
GSM782987 | D | 70 | ACI | 2 | 36973 | 2001-10-22 | M | WNH | Former | not specified | 1 | ACA | DOD | 2000-02-16 | 37186 | 13 | LtLungTumor | mediastinum | MD | 82 | 20 | 2B | Asbestos exposure | 6-10yrs | Wild-type |
GSM782986 | D | 58 | ACI | 2 | not specified | 1998-05-30 | F | WNH | Former | not specified | 0 | ACA | DOC | 1998-05-18 | 35945 | not specified | LtLungTumor | not specified | PD | 45 | 0 | 1B | not specified | >10yrs | Wild-type |
GSM782985 | A | 74 | BAC,ACI | 2 | 37734 | 2003-08-23 | M | WNH | Former | not specified | 0 | BWFI | AWD | 2000-01-17 | not specified | 39 | RtLungTumor | Pleura-Rt. Parietal | WD | 154 | 43 | 1B | Cigar | >10yrs | Mutant |
GSM782984 | A | 50 | ACI, BAC | 1 | not specified | 2001-07-05 | F | WNH | Current | not specified | 0 | AWBF | NED | 2000-04-24 | not specified | not specified | RtLungTumor | not specified | MD | 45 | 15 | 1A | Quit by OR | 0 | Wild-type |
GSM782983 | A | 62 | BAC, ACI | 2 | not specified | 2000-02-03 | M | WNH | Former | not specified | 0 | BWFI | NED | 1997-05-20 | not specified | not specified | RtLungTumor | not specified | MD | 20 | 33 | 1B | not specified | 6-10yrs | Wild-type |
GSM782982 | D | 52 | ACI, SOL | 2 | 36594 | 2000-09-28 | F | WNH | Current | not specified | 2 | ACA | DOD | 1999-07-19 | 36797 | 8 | LtLungTumor | Adrenal | MD, PD | 52.5 | 14 | 3A | Quit by OR | 0 | Wild-type |
GSM78298 | A | 68 | BAC, ACI | 2 | 37347 | 2003-03-05 | M | WNH | Former | not specified | 0 | BWFI | AWD | 1999-03-09 | not specified | 37 | RtLungTumor | Lt. Adrenal | MD | 80 | 48 | 1B | not specified | 6-10yrs | Wild-type |
GSM782980 | D | 48 | PAP, BAC | 2 | 33715 | 1993-06-03 | F | WNH | UNK | not specified | 1 | AWBF | DOD | 1991-09-03 | 34123 | 7 | ?? Upper Lobe | ?? Pleura, ?? Hemidiaphragm | MD | UNK | 21 | 2 | Not available | not specified | Mutant |
GSM782979 | A | 65 | BAC, ACI | 1 | not specified | 2003-09-10 | F | WNH | Former | not specified | 0 | BWFI | NED | 2000-06-29 | not specified | not specified | RtLungTumor | not specified | WD | 34.5 | 39 | 1A | not specified | >10yrs | Wild-type |
GSM782978 | A | 70 | BAC (M, NM) | 1 | not specified | 2002-12-10 | F | WNH | Former | not specified | 0 | PBAC | NED | 1999-01-13 | not specified | not specified | LtLungTumor | not specified | WD | 20 | 47 | 1A | not specified | >10yrs | Wild-type |