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Dataset: MSKCC-A Primary Lung Cancer Specimens

Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated...

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Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated with the EGFR-dependent phenotype 30 primary lung adenocarcinomas and 20 adjacent normal lung controls were analyzed with Affymetrix U133A

Species:
human

Samples:
50

Source:
E-GEOD-31547

Updated:
Dec.12, 2014

Registered:
Jun.18, 2014


Factors: (via ArrayExpress)
Sample SURGDTE/TB_DATE AGE WHO HISTOLOGIC SUBTYPE PT RECDTE1 LAST F/U SEX RACE SMOKING PACK YRS PN MSKCC HISTOLOGY STATUS GRPSTAGE DEATHDTE INTREC1 TUMORSITE RECTYPE1 WHO GRADE CT INTSTAT DEATH_IND OTHER TIME QUIT (@ INITIAL CONSULT) EGFR STATUS
GSM783027 not specified 74 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783024 not specified not specified not specified not specified not specified not specified F not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM78302 not specified 49 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783020 not specified 76 not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783015 not specified 74 not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783014 not specified 62 not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783013 not specified 52 not specified not specified not specified not specified F WNH Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783010 not specified not specified not specified not specified not specified not specified M not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783009 not specified 65 not specified not specified not specified not specified F WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783007 1999-05-11 69 ACI 1 not specified 2002-03-22 M WNH Never 0 2 ACA NED 3A not specified not specified LungTumor not specified MD not specified 34 A not specified not specified Wild-type
GSM783006 1998-02-12 79 ACI, BAC 1 36032 1998-12-18 F WNH Never 0 1 AWBF DOD 2A 36147 6 LungTumor Brain ?? temporal lobe MD not specified 10 D not specified not specified Mutant
GSM783005 2000-04-28 74 ACI 2 37412 2004-06-10 F WNH Never 0 1 ACA AWD 2B not specified 26 LtLungTumor pleura MD T1 50 A not specified not specified Mutant
GSM783004 2000-10-03 63 BAC, ACI 1 not specified 2004-05-10 F WNH Never 0 0 BWFI NED 1A not specified not specified RtLungTumor not specified WD not specified 44 A 2nd hand smoke exposure not specified Mutant
GSM783003 1993-01-15 51 ACI, BAC 1 33557 1993-04-21 F WNH UNK UNK 1 AWBF DOD 1A 34080 7 (L) Upper Lobe Bone-rib MD not specified 3 D Not available not specified Wild-type
GSM783002 2001-06-04 64 ACI 1 not specified 2004-03-08 F WNH Former 40 2 ACA DOC 3A 38054 not specified LungTumor,LtUpper not specified MD not specified not specified A not specified 1-6mos Wild-type
GSM78300 2000-10-18 70 ACI 2 36978 2004-06-23 F BNH Former 5 0 ACA NED 1B not specified 5 LtLungTumor Left Suprahilar region MD TX 44 A not specified 6-10yrs Mutant
GSM783000 1998-10-12 48 ACI, BAC 1 36960 2003-01-07 F WNH Former 3 2 AWBF DOD 3A 37628 29 LtLungTumor brain MD not specified 51 D not specified >10yrs Mutant
GSM782999 1999-12-15 74 SOL 2 not specified 2003-06-24 F WNH Current 50 1 ACA NED 2B not specified not specified LtLungTumor not specified PD not specified 42 A Quit by OR 0 Wild-type
GSM782998 2000-05-03 61 ACI, BAC 2 37459 2003-10-07 M WNH Former 5 0 AWBF NED 1B not specified 26 LungTumor Lung-RLL MD not specified 41 A not specified >10yrs Mutant
GSM782997 2000-08-31 53 SOL 2 37138 2002-04-15 F WNH Former 123 1 ACA DOD 2B 37361 13 RtLungTumor Peripancreatic PD not specified 20 D not specified 6-12mos Wild-type
GSM782996 2000-04-11 53 BAC, ACI 1 not specified 2003-04-15 F WNH Never 0 0 BWFI NED 1A not specified not specified RtLungTumor not specified WD not specified 36 A 2nd hand smoke exposure not specified Mutant
GSM782995 1999-06-23 69 SOL 2 not specified 2004-06-23 F WNH Former UNK 0 ACA NED 1B not specified not specified LungTumor not specified PD not specified 60 A UNK if quit by OR, Pipe 0 Wild-type
GSM782994 2000-06-13 50 ACI 2 37529 2003-12-27 F WNH Former 10 2 ACA DOD 3A not specified 27 LtLungTumor ?? Posterior chest wall MD not specified 42 A not specified >10yrs Mutant
GSM782993 1999-01-11 51 BAC,ACI 2 not specified 2003-03-01 M WNH Never 0 1 BWFI NED 2B not specified not specified RtLungTumor not specified WD not specified 50 A not specified not specified Wild-type
GSM782992 1998-12-14 46 ACI 1 not specified 2002-03-08 F WNH Former 80 0 ACA NED 1A not specified not specified RtLungTumor not specified MD not specified 39 A not specified 1-4wks Wild-type
GSM78299 1996-01-16 49 BAC, ACI 1 not specified 2003-06-25 F WNH Never 0 0 BWFI NED 1A not specified not specified LtLungTumo not specified WD not specified 89 A not specified not specified Mutant
GSM782990 2001-07-12 76 BAC,ACI 1 not specified 2004-08-23 F WNH Never 0 0 BWFI NED 1A not specified not specified LungTumor,LtUpper not specified MD not specified 37 A not specified not specified Mutant
GSM782989 1996-11-25 57 BAC, ACI 2 not specified 2000-10-03 F WNH Former 37 0 BWFI NED 1B not specified not specified RtLungTumor not specified WD not specified 47 A not specified UNK Mutant
GSM782988 2000-02-02 67 BAC,ACI 1 37204 2002-10-12 M WNH Never 0 1 BWFI DOD 2A 37541 21 RtLungTumor pleura MD not specified 32 D Cigar not specified Mutant
GSM782987 2000-02-16 70 ACI 2 36973 2001-10-22 M WNH Former 82 1 ACA DOD 2B 37186 13 LtLungTumor mediastinum MD not specified 20 D Asbestos exposure 6-10yrs Wild-type
GSM782986 1998-05-18 58 ACI 2 not specified 1998-05-30 F WNH Former 45 0 ACA DOC 1B 35945 not specified LtLungTumor not specified PD not specified 0 D not specified >10yrs Wild-type
GSM782985 2000-01-17 74 BAC,ACI 2 37734 2003-08-23 M WNH Former 154 0 BWFI AWD 1B not specified 39 RtLungTumor Pleura-Rt. Parietal WD not specified 43 A Cigar >10yrs Mutant
GSM782984 2000-04-24 50 ACI, BAC 1 not specified 2001-07-05 F WNH Current 45 0 AWBF NED 1A not specified not specified RtLungTumor not specified MD not specified 15 A Quit by OR 0 Wild-type
GSM782983 1997-05-20 62 BAC, ACI 2 not specified 2000-02-03 M WNH Former 20 0 BWFI NED 1B not specified not specified RtLungTumor not specified MD not specified 33 A not specified 6-10yrs Wild-type
GSM782982 1999-07-19 52 ACI, SOL 2 36594 2000-09-28 F WNH Current 52.5 2 ACA DOD 3A 36797 8 LtLungTumor Adrenal MD, PD not specified 14 D Quit by OR 0 Wild-type
GSM78298 1999-03-09 68 BAC, ACI 2 37347 2003-03-05 M WNH Former 80 0 BWFI AWD 1B not specified 37 RtLungTumor Lt. Adrenal MD not specified 48 A not specified 6-10yrs Wild-type
GSM782980 1991-09-03 48 PAP, BAC 2 33715 1993-06-03 F WNH UNK UNK 1 AWBF DOD 2 34123 7 ?? Upper Lobe ?? Pleura, ?? Hemidiaphragm MD not specified 21 D Not available not specified Mutant
GSM782979 2000-06-29 65 BAC, ACI 1 not specified 2003-09-10 F WNH Former 34.5 0 BWFI NED 1A not specified not specified RtLungTumor not specified WD not specified 39 A not specified >10yrs Wild-type
GSM782978 1999-01-13 70 BAC (M, NM) 1 not specified 2002-12-10 F WNH Former 20 0 PBAC NED 1A not specified not specified LtLungTumor not specified WD not specified 47 A not specified >10yrs Wild-type

Tags

  • adenocarcinomas
  • lung

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