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Home › Dataset Library › MSKCC-A Primary Lung Cancer Specimens

Dataset: MSKCC-A Primary Lung Cancer Specimens

Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated...

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Develop an EGFR mutation gene expression signature to aid in predicting response and clinical outcome and to identify genes associated with the EGFR-dependent phenotype 30 primary lung adenocarcinomas and 20 adjacent normal lung controls were analyzed with Affymetrix U133A

Species:
human

Samples:
50

Source:
E-GEOD-31547

Updated:
Dec.12, 2014

Registered:
Jun.18, 2014


Factors: (via ArrayExpress)
Sample DEATH_IND AGE WHO HISTOLOGIC SUBTYPE SURGDTE/TB_DATE PT RECDTE1 LAST F/U SEX RACE SMOKING PACK YRS PN MSKCC HISTOLOGY STATUS GRPSTAGE DEATHDTE OTHER TUMORSITE RECTYPE1 WHO GRADE CT INTSTAT INTREC1 TIME QUIT (@ INITIAL CONSULT) EGFR STATUS
GSM783027 not specified 74 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783024 not specified not specified not specified not specified not specified not specified not specified F not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM78302 not specified 49 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783020 not specified 76 not specified not specified not specified not specified not specified F WNH Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783015 not specified 74 not specified not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783014 not specified 62 not specified not specified not specified not specified not specified M WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783013 not specified 52 not specified not specified not specified not specified not specified F WNH Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783019 not specified not specified not specified not specified not specified not specified not specified M not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783026 not specified not specified not specified not specified not specified not specified not specified F not specified Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783010 not specified not specified not specified not specified not specified not specified not specified M not specified Current not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783009 not specified 65 not specified not specified not specified not specified not specified F WNH Former not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783018 not specified not specified not specified not specified not specified not specified not specified F not specified Never not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified Wild-type
GSM783007 A 69 ACI 1999-05-11 1 not specified 2002-03-22 M WNH Never 0 2 ACA NED 3A not specified not specified LungTumor not specified MD not specified 34 not specified not specified Wild-type
GSM783006 D 79 ACI, BAC 1998-02-12 1 36032 1998-12-18 F WNH Never 0 1 AWBF DOD 2A 36147 not specified LungTumor Brain ?? temporal lobe MD not specified 10 6 not specified Mutant
GSM783005 A 74 ACI 2000-04-28 2 37412 2004-06-10 F WNH Never 0 1 ACA AWD 2B not specified not specified LtLungTumor pleura MD T1 50 26 not specified Mutant
GSM783004 A 63 BAC, ACI 2000-10-03 1 not specified 2004-05-10 F WNH Never 0 0 BWFI NED 1A not specified 2nd hand smoke exposure RtLungTumor not specified WD not specified 44 not specified not specified Mutant
GSM783003 D 51 ACI, BAC 1993-01-15 1 33557 1993-04-21 F WNH UNK UNK 1 AWBF DOD 1A 34080 Not available (L) Upper Lobe Bone-rib MD not specified 3 7 not specified Wild-type
GSM783002 A 64 ACI 2001-06-04 1 not specified 2004-03-08 F WNH Former 40 2 ACA DOC 3A 38054 not specified LungTumor,LtUpper not specified MD not specified not specified not specified 1-6mos Wild-type
GSM78300 A 70 ACI 2000-10-18 2 36978 2004-06-23 F BNH Former 5 0 ACA NED 1B not specified not specified LtLungTumor Left Suprahilar region MD TX 44 5 6-10yrs Mutant
GSM783000 D 48 ACI, BAC 1998-10-12 1 36960 2003-01-07 F WNH Former 3 2 AWBF DOD 3A 37628 not specified LtLungTumor brain MD not specified 51 29 >10yrs Mutant
GSM782999 A 74 SOL 1999-12-15 2 not specified 2003-06-24 F WNH Current 50 1 ACA NED 2B not specified Quit by OR LtLungTumor not specified PD not specified 42 not specified 0 Wild-type
GSM782998 A 61 ACI, BAC 2000-05-03 2 37459 2003-10-07 M WNH Former 5 0 AWBF NED 1B not specified not specified LungTumor Lung-RLL MD not specified 41 26 >10yrs Mutant
GSM782997 D 53 SOL 2000-08-31 2 37138 2002-04-15 F WNH Former 123 1 ACA DOD 2B 37361 not specified RtLungTumor Peripancreatic PD not specified 20 13 6-12mos Wild-type
GSM782996 A 53 BAC, ACI 2000-04-11 1 not specified 2003-04-15 F WNH Never 0 0 BWFI NED 1A not specified 2nd hand smoke exposure RtLungTumor not specified WD not specified 36 not specified not specified Mutant
GSM782995 A 69 SOL 1999-06-23 2 not specified 2004-06-23 F WNH Former UNK 0 ACA NED 1B not specified UNK if quit by OR, Pipe LungTumor not specified PD not specified 60 not specified 0 Wild-type
GSM782994 A 50 ACI 2000-06-13 2 37529 2003-12-27 F WNH Former 10 2 ACA DOD 3A not specified not specified LtLungTumor ?? Posterior chest wall MD not specified 42 27 >10yrs Mutant
GSM782993 A 51 BAC,ACI 1999-01-11 2 not specified 2003-03-01 M WNH Never 0 1 BWFI NED 2B not specified not specified RtLungTumor not specified WD not specified 50 not specified not specified Wild-type
GSM782992 A 46 ACI 1998-12-14 1 not specified 2002-03-08 F WNH Former 80 0 ACA NED 1A not specified not specified RtLungTumor not specified MD not specified 39 not specified 1-4wks Wild-type
GSM78299 A 49 BAC, ACI 1996-01-16 1 not specified 2003-06-25 F WNH Never 0 0 BWFI NED 1A not specified not specified LtLungTumo not specified WD not specified 89 not specified not specified Mutant
GSM782990 A 76 BAC,ACI 2001-07-12 1 not specified 2004-08-23 F WNH Never 0 0 BWFI NED 1A not specified not specified LungTumor,LtUpper not specified MD not specified 37 not specified not specified Mutant
GSM782989 A 57 BAC, ACI 1996-11-25 2 not specified 2000-10-03 F WNH Former 37 0 BWFI NED 1B not specified not specified RtLungTumor not specified WD not specified 47 not specified UNK Mutant
GSM782988 D 67 BAC,ACI 2000-02-02 1 37204 2002-10-12 M WNH Never 0 1 BWFI DOD 2A 37541 Cigar RtLungTumor pleura MD not specified 32 21 not specified Mutant
GSM782987 D 70 ACI 2000-02-16 2 36973 2001-10-22 M WNH Former 82 1 ACA DOD 2B 37186 Asbestos exposure LtLungTumor mediastinum MD not specified 20 13 6-10yrs Wild-type
GSM782986 D 58 ACI 1998-05-18 2 not specified 1998-05-30 F WNH Former 45 0 ACA DOC 1B 35945 not specified LtLungTumor not specified PD not specified 0 not specified >10yrs Wild-type
GSM782985 A 74 BAC,ACI 2000-01-17 2 37734 2003-08-23 M WNH Former 154 0 BWFI AWD 1B not specified Cigar RtLungTumor Pleura-Rt. Parietal WD not specified 43 39 >10yrs Mutant
GSM782984 A 50 ACI, BAC 2000-04-24 1 not specified 2001-07-05 F WNH Current 45 0 AWBF NED 1A not specified Quit by OR RtLungTumor not specified MD not specified 15 not specified 0 Wild-type
GSM782983 A 62 BAC, ACI 1997-05-20 2 not specified 2000-02-03 M WNH Former 20 0 BWFI NED 1B not specified not specified RtLungTumor not specified MD not specified 33 not specified 6-10yrs Wild-type
GSM782982 D 52 ACI, SOL 1999-07-19 2 36594 2000-09-28 F WNH Current 52.5 2 ACA DOD 3A 36797 Quit by OR LtLungTumor Adrenal MD, PD not specified 14 8 0 Wild-type
GSM78298 A 68 BAC, ACI 1999-03-09 2 37347 2003-03-05 M WNH Former 80 0 BWFI AWD 1B not specified not specified RtLungTumor Lt. Adrenal MD not specified 48 37 6-10yrs Wild-type
GSM782980 D 48 PAP, BAC 1991-09-03 2 33715 1993-06-03 F WNH UNK UNK 1 AWBF DOD 2 34123 Not available ?? Upper Lobe ?? Pleura, ?? Hemidiaphragm MD not specified 21 7 not specified Mutant
GSM782979 A 65 BAC, ACI 2000-06-29 1 not specified 2003-09-10 F WNH Former 34.5 0 BWFI NED 1A not specified not specified RtLungTumor not specified WD not specified 39 not specified >10yrs Wild-type
GSM782978 A 70 BAC (M, NM) 1999-01-13 1 not specified 2002-12-10 F WNH Former 20 0 PBAC NED 1A not specified not specified LtLungTumor not specified WD not specified 47 not specified >10yrs Wild-type

Tags

  • adenocarcinomas
  • lung

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