BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Gene expression profiling in myelodysplastic syndromes

Dataset: Gene expression profiling in myelodysplastic syndromes

Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell...

Registered by ArrayExpress Uploader
View Dataset

Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell formation and peripheral blood cytopenias. Up to 30% of patients with MDS will progress to a highly chemotherapy-resistant secondary acute myeloid leukemia (sAML). We identified mutations in U2AF1 in MDS patients and patients with U2AF1 mutations are at an increased risk of developing sAML. We identified mutations in U2AF1 in patients with MDS and hypothesized that U2AF1 mutations may represent a novel mechanism that could alter gene expression in MDS. To elucidate gene expression changes associated with U2AF1 mutations, we analyzed the global mRNA expression profile obtained from bone marrow CD34+ cells purified from 5 MDS patients with a U2AF1 mutation, 10 MDS patients without a mutation, and 4 normal donors.

Species:
human

Samples:
19

Source:
E-GEOD-30195

Updated:
Dec.12, 2014

Registered:
Sep.16, 2014


Factors: (via ArrayExpress)
Sample UPN IPSS PLATELET (X10^3/MCL) GENOTYPE CYTOGENETICS WBC (X10^3/MCL) BANKING DATE AGE ON STUDY ANC (X10^3/MCL) CYTOGENETIC RISK GROUP SEX FAB RACE BONE MARROW MYELOBLAST(%) HEMOGLOBIN (G/DL) DISEASE STATE DURATION OF DISEASE (MONTH) CELL TYPE DIAGNOSIS DATE
GSM747424 127804 0.5 195 no U2AF1 mutation 46, XY[20] 2.3 8/3/2005 64 1.4 Good male RA White 2 8.9 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-08-03
GSM747425 300813 0 243 U2AF1 mutation 46, XX[20] 2.7 7/12/2005 41 1.2 Good female RA White 2 12.2 myelodysplastic syndrome 3 CD34+ purified MDS bone marrow 2005-04-26
GSM747426 321864 2.5 56 U2AF1 mutation 47,XX,+8[20] 1.9 10/3/2005 63 0.3 Intermediate female RAEB White 12 9.8 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-10-03
GSM747427 350460 0.5 37 no U2AF1 mutation 46, XY[20] 2.1 11/17/2006 30 1.6 Good male RA Black 4 7.5 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-11-17
GSM747428 372440 0 123 no U2AF1 mutation 46,XY[20] 2.9 5/5/2006 59 1.4 Good male RA White 2 13.8 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 5/5/2006
GSM747429 421452 1 22 no U2AF1 mutation 46,XX[20] 3.3 11/4/2005 33 0.9 Good female RAEB White 10 8.3 myelodysplastic syndrome 2 CD34+ purified MDS bone marrow 2005-09-30
GSM747430 431137 2 8 no U2AF1 mutation 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6] 6.5 8/29/2006 54 4.6 Poor male RAEB White 7 8.2 myelodysplastic syndrome 1 CD34+ purified MDS bone marrow 2006-07-05
GSM74743 497942 1 24 no U2AF1 mutation 46,XY,der(1;22)(q10;q10)[4]/46,XY[16] 4.1 1/18/2006 47 1.6 Intermediate male RA White 0 8.6 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-01-18
GSM747432 667720 1 61 no U2AF1 mutation 46,XX[20] 5.1 5/9/2006 65 2.3 Good female RAEB White 10 8.8 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-05-01
GSM747433 703653 0.5 27 no U2AF1 mutation 46,XX[20] 3 2/2/2005 20 0.6 Good female RA White 0 8.4 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-02-02
GSM747434 705782 1 28 no U2AF1 mutation 46,XY[20] 3.3 8/4/2006 34 1.7 Good male RAEB White 5 9.7 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-08-04
GSM747435 843623 1 64 U2AF1 mutation 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18] 0.7 3/3/2003 59 0.4 Good male RAEB White 6 9.7 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2003-03-03
GSM747436 917011 0.5 107 U2AF1 mutation 46,XY,del(20)(q11.2)[12]/46,XY[8] 3.3 6/2/2006 80 0.5 Good male RA White 0 8.2 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-06-02
GSM747437 937954 3 35 U2AF1 mutation 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1] 1.2 9/20/2005 50 0.3 Poor male RAEB White 12 9.9 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-09-12
GSM747438 989739 3 52 U2AF1 mutation 46,XY,del(7)(q21)[8]/46,XY[12] 1.2 9/30/2005 71 0.2 Poor male RAEB White 18 11 myelodysplastic syndrome 1 CD34+ purified MDS bone marrow 2005-08-15
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown

Tags

  • acute myeloid leukemia
  • blood cell
  • bone
  • bone marrow
  • cell
  • leukemia
  • myeloid leukemia
  • peripheral
  • stem cell

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2026 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use