Dataset: Gene expression profiling in myelodysplastic syndromes
Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell...
Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell formation and peripheral blood cytopenias. Up to 30% of patients with MDS will progress to a highly chemotherapy-resistant secondary acute myeloid leukemia (sAML). We identified mutations in U2AF1 in MDS patients and patients with U2AF1 mutations are at an increased risk of developing sAML. We identified mutations in U2AF1 in patients with MDS and hypothesized that U2AF1 mutations may represent a novel mechanism that could alter gene expression in MDS. To elucidate gene expression changes associated with U2AF1 mutations, we analyzed the global mRNA expression profile obtained from bone marrow CD34+ cells purified from 5 MDS patients with a U2AF1 mutation, 10 MDS patients without a mutation, and 4 normal donors.
- Species:
- human
- Samples:
- 19
- Source:
- E-GEOD-30195
- Updated:
- Dec.12, 2014
- Registered:
- Sep.16, 2014
Sample | UPN | IPSS | PLATELET (X10^3/MCL) | GENOTYPE | AGE ON STUDY | WBC (X10^3/MCL) | BANKING DATE | CYTOGENETICS | ANC (X10^3/MCL) | BONE MARROW MYELOBLAST(%) | CYTOGENETIC RISK GROUP | SEX | FAB | RACE | HEMOGLOBIN (G/DL) | DISEASE STATE | DURATION OF DISEASE (MONTH) | CELL TYPE | DIAGNOSIS DATE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSM747424 | 127804 | 0.5 | 195 | no U2AF1 mutation | 64 | 2.3 | 8/3/2005 | 46, XY[20] | 1.4 | 2 | Good | male | RA | White | 8.9 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2005-08-03 |
GSM747425 | 300813 | 0 | 243 | U2AF1 mutation | 41 | 2.7 | 7/12/2005 | 46, XX[20] | 1.2 | 2 | Good | female | RA | White | 12.2 | myelodysplastic syndrome | 3 | CD34+ purified MDS bone marrow | 2005-04-26 |
GSM747426 | 321864 | 2.5 | 56 | U2AF1 mutation | 63 | 1.9 | 10/3/2005 | 47,XX,+8[20] | 0.3 | 12 | Intermediate | female | RAEB | White | 9.8 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2005-10-03 |
GSM747427 | 350460 | 0.5 | 37 | no U2AF1 mutation | 30 | 2.1 | 11/17/2006 | 46, XY[20] | 1.6 | 4 | Good | male | RA | Black | 7.5 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2006-11-17 |
GSM747428 | 372440 | 0 | 123 | no U2AF1 mutation | 59 | 2.9 | 5/5/2006 | 46,XY[20] | 1.4 | 2 | Good | male | RA | White | 13.8 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 5/5/2006 |
GSM747429 | 421452 | 1 | 22 | no U2AF1 mutation | 33 | 3.3 | 11/4/2005 | 46,XX[20] | 0.9 | 10 | Good | female | RAEB | White | 8.3 | myelodysplastic syndrome | 2 | CD34+ purified MDS bone marrow | 2005-09-30 |
GSM747430 | 431137 | 2 | 8 | no U2AF1 mutation | 54 | 6.5 | 8/29/2006 | 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6] | 4.6 | 7 | Poor | male | RAEB | White | 8.2 | myelodysplastic syndrome | 1 | CD34+ purified MDS bone marrow | 2006-07-05 |
GSM74743 | 497942 | 1 | 24 | no U2AF1 mutation | 47 | 4.1 | 1/18/2006 | 46,XY,der(1;22)(q10;q10)[4]/46,XY[16] | 1.6 | 0 | Intermediate | male | RA | White | 8.6 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2006-01-18 |
GSM747432 | 667720 | 1 | 61 | no U2AF1 mutation | 65 | 5.1 | 5/9/2006 | 46,XX[20] | 2.3 | 10 | Good | female | RAEB | White | 8.8 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2006-05-01 |
GSM747433 | 703653 | 0.5 | 27 | no U2AF1 mutation | 20 | 3 | 2/2/2005 | 46,XX[20] | 0.6 | 0 | Good | female | RA | White | 8.4 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2005-02-02 |
GSM747434 | 705782 | 1 | 28 | no U2AF1 mutation | 34 | 3.3 | 8/4/2006 | 46,XY[20] | 1.7 | 5 | Good | male | RAEB | White | 9.7 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2006-08-04 |
GSM747435 | 843623 | 1 | 64 | U2AF1 mutation | 59 | 0.7 | 3/3/2003 | 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18] | 0.4 | 6 | Good | male | RAEB | White | 9.7 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2003-03-03 |
GSM747436 | 917011 | 0.5 | 107 | U2AF1 mutation | 80 | 3.3 | 6/2/2006 | 46,XY,del(20)(q11.2)[12]/46,XY[8] | 0.5 | 0 | Good | male | RA | White | 8.2 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2006-06-02 |
GSM747437 | 937954 | 3 | 35 | U2AF1 mutation | 50 | 1.2 | 9/20/2005 | 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1] | 0.3 | 12 | Poor | male | RAEB | White | 9.9 | myelodysplastic syndrome | 0 | CD34+ purified MDS bone marrow | 2005-09-12 |
GSM747438 | 989739 | 3 | 52 | U2AF1 mutation | 71 | 1.2 | 9/30/2005 | 46,XY,del(7)(q21)[8]/46,XY[12] | 0.2 | 18 | Poor | male | RAEB | White | 11 | myelodysplastic syndrome | 1 | CD34+ purified MDS bone marrow | 2005-08-15 |
GSM747439 | not specified | unknown | unknown | control | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | control | unknown | CD34+ purified control bone marrow | unknown |
GSM747439 | not specified | unknown | unknown | control | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | control | unknown | CD34+ purified control bone marrow | unknown |
GSM747439 | not specified | unknown | unknown | control | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | control | unknown | CD34+ purified control bone marrow | unknown |
GSM747439 | not specified | unknown | unknown | control | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | unknown | control | unknown | CD34+ purified control bone marrow | unknown |