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Home › Dataset Library › Gene expression profiling in myelodysplastic syndromes

Dataset: Gene expression profiling in myelodysplastic syndromes

Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell...

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Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell formation and peripheral blood cytopenias. Up to 30% of patients with MDS will progress to a highly chemotherapy-resistant secondary acute myeloid leukemia (sAML). We identified mutations in U2AF1 in MDS patients and patients with U2AF1 mutations are at an increased risk of developing sAML. We identified mutations in U2AF1 in patients with MDS and hypothesized that U2AF1 mutations may represent a novel mechanism that could alter gene expression in MDS. To elucidate gene expression changes associated with U2AF1 mutations, we analyzed the global mRNA expression profile obtained from bone marrow CD34+ cells purified from 5 MDS patients with a U2AF1 mutation, 10 MDS patients without a mutation, and 4 normal donors.

Species:
human

Samples:
19

Source:
E-GEOD-30195

Updated:
Dec.12, 2014

Registered:
Sep.16, 2014


Factors: (via ArrayExpress)
Sample UPN IPSS ANC (X10^3/MCL) GENOTYPE AGE ON STUDY PLATELET (X10^3/MCL) BANKING DATE CYTOGENETICS CYTOGENETIC RISK GROUP SEX FAB RACE BONE MARROW MYELOBLAST(%) HEMOGLOBIN (G/DL) WBC (X10^3/MCL) DISEASE STATE DURATION OF DISEASE (MONTH) CELL TYPE DIAGNOSIS DATE
GSM747424 127804 0.5 1.4 no U2AF1 mutation 64 195 8/3/2005 46, XY[20] Good male RA White 2 8.9 2.3 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-08-03
GSM747425 300813 0 1.2 U2AF1 mutation 41 243 7/12/2005 46, XX[20] Good female RA White 2 12.2 2.7 myelodysplastic syndrome 3 CD34+ purified MDS bone marrow 2005-04-26
GSM747426 321864 2.5 0.3 U2AF1 mutation 63 56 10/3/2005 47,XX,+8[20] Intermediate female RAEB White 12 9.8 1.9 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-10-03
GSM747427 350460 0.5 1.6 no U2AF1 mutation 30 37 11/17/2006 46, XY[20] Good male RA Black 4 7.5 2.1 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-11-17
GSM747428 372440 0 1.4 no U2AF1 mutation 59 123 5/5/2006 46,XY[20] Good male RA White 2 13.8 2.9 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 5/5/2006
GSM747429 421452 1 0.9 no U2AF1 mutation 33 22 11/4/2005 46,XX[20] Good female RAEB White 10 8.3 3.3 myelodysplastic syndrome 2 CD34+ purified MDS bone marrow 2005-09-30
GSM747430 431137 2 4.6 no U2AF1 mutation 54 8 8/29/2006 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6] Poor male RAEB White 7 8.2 6.5 myelodysplastic syndrome 1 CD34+ purified MDS bone marrow 2006-07-05
GSM74743 497942 1 1.6 no U2AF1 mutation 47 24 1/18/2006 46,XY,der(1;22)(q10;q10)[4]/46,XY[16] Intermediate male RA White 0 8.6 4.1 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-01-18
GSM747432 667720 1 2.3 no U2AF1 mutation 65 61 5/9/2006 46,XX[20] Good female RAEB White 10 8.8 5.1 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-05-01
GSM747433 703653 0.5 0.6 no U2AF1 mutation 20 27 2/2/2005 46,XX[20] Good female RA White 0 8.4 3 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-02-02
GSM747434 705782 1 1.7 no U2AF1 mutation 34 28 8/4/2006 46,XY[20] Good male RAEB White 5 9.7 3.3 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-08-04
GSM747435 843623 1 0.4 U2AF1 mutation 59 64 3/3/2003 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18] Good male RAEB White 6 9.7 0.7 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2003-03-03
GSM747436 917011 0.5 0.5 U2AF1 mutation 80 107 6/2/2006 46,XY,del(20)(q11.2)[12]/46,XY[8] Good male RA White 0 8.2 3.3 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2006-06-02
GSM747437 937954 3 0.3 U2AF1 mutation 50 35 9/20/2005 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1] Poor male RAEB White 12 9.9 1.2 myelodysplastic syndrome 0 CD34+ purified MDS bone marrow 2005-09-12
GSM747438 989739 3 0.2 U2AF1 mutation 71 52 9/30/2005 46,XY,del(7)(q21)[8]/46,XY[12] Poor male RAEB White 18 11 1.2 myelodysplastic syndrome 1 CD34+ purified MDS bone marrow 2005-08-15
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown CD34+ purified control bone marrow unknown

Tags

  • acute myeloid leukemia
  • blood cell
  • bone
  • bone marrow
  • cell
  • leukemia
  • myeloid leukemia
  • peripheral
  • stem cell

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