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Home › Dataset Library › Gene expression profiling in myelodysplastic syndromes

Dataset: Gene expression profiling in myelodysplastic syndromes

Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell...

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Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell formation and peripheral blood cytopenias. Up to 30% of patients with MDS will progress to a highly chemotherapy-resistant secondary acute myeloid leukemia (sAML). We identified mutations in U2AF1 in MDS patients and patients with U2AF1 mutations are at an increased risk of developing sAML. We identified mutations in U2AF1 in patients with MDS and hypothesized that U2AF1 mutations may represent a novel mechanism that could alter gene expression in MDS. To elucidate gene expression changes associated with U2AF1 mutations, we analyzed the global mRNA expression profile obtained from bone marrow CD34+ cells purified from 5 MDS patients with a U2AF1 mutation, 10 MDS patients without a mutation, and 4 normal donors.

Species:
human

Samples:
19

Source:
E-GEOD-30195

Updated:
Dec.12, 2014

Registered:
Sep.16, 2014


Factors: (via ArrayExpress)
Sample UPN IPSS ANC (X10^3/MCL) GENOTYPE PLATELET (X10^3/MCL) AGE ON STUDY WBC (X10^3/MCL) BANKING DATE CYTOGENETICS CYTOGENETIC RISK GROUP CELL TYPE DISEASE STATE BONE MARROW MYELOBLAST(%) HEMOGLOBIN (G/DL) FAB DURATION OF DISEASE (MONTH) SEX RACE DIAGNOSIS DATE
GSM747424 127804 0.5 1.4 no U2AF1 mutation 195 64 2.3 8/3/2005 46, XY[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 2 8.9 RA 0 male White 2005-08-03
GSM747425 300813 0 1.2 U2AF1 mutation 243 41 2.7 7/12/2005 46, XX[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 2 12.2 RA 3 female White 2005-04-26
GSM747426 321864 2.5 0.3 U2AF1 mutation 56 63 1.9 10/3/2005 47,XX,+8[20] Intermediate CD34+ purified MDS bone marrow myelodysplastic syndrome 12 9.8 RAEB 0 female White 2005-10-03
GSM747427 350460 0.5 1.6 no U2AF1 mutation 37 30 2.1 11/17/2006 46, XY[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 4 7.5 RA 0 male Black 2006-11-17
GSM747428 372440 0 1.4 no U2AF1 mutation 123 59 2.9 5/5/2006 46,XY[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 2 13.8 RA 0 male White 5/5/2006
GSM747429 421452 1 0.9 no U2AF1 mutation 22 33 3.3 11/4/2005 46,XX[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 10 8.3 RAEB 2 female White 2005-09-30
GSM747430 431137 2 4.6 no U2AF1 mutation 8 54 6.5 8/29/2006 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6] Poor CD34+ purified MDS bone marrow myelodysplastic syndrome 7 8.2 RAEB 1 male White 2006-07-05
GSM74743 497942 1 1.6 no U2AF1 mutation 24 47 4.1 1/18/2006 46,XY,der(1;22)(q10;q10)[4]/46,XY[16] Intermediate CD34+ purified MDS bone marrow myelodysplastic syndrome 0 8.6 RA 0 male White 2006-01-18
GSM747432 667720 1 2.3 no U2AF1 mutation 61 65 5.1 5/9/2006 46,XX[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 10 8.8 RAEB 0 female White 2006-05-01
GSM747433 703653 0.5 0.6 no U2AF1 mutation 27 20 3 2/2/2005 46,XX[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 0 8.4 RA 0 female White 2005-02-02
GSM747434 705782 1 1.7 no U2AF1 mutation 28 34 3.3 8/4/2006 46,XY[20] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 5 9.7 RAEB 0 male White 2006-08-04
GSM747435 843623 1 0.4 U2AF1 mutation 64 59 0.7 3/3/2003 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 6 9.7 RAEB 0 male White 2003-03-03
GSM747436 917011 0.5 0.5 U2AF1 mutation 107 80 3.3 6/2/2006 46,XY,del(20)(q11.2)[12]/46,XY[8] Good CD34+ purified MDS bone marrow myelodysplastic syndrome 0 8.2 RA 0 male White 2006-06-02
GSM747437 937954 3 0.3 U2AF1 mutation 35 50 1.2 9/20/2005 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1] Poor CD34+ purified MDS bone marrow myelodysplastic syndrome 12 9.9 RAEB 0 male White 2005-09-12
GSM747438 989739 3 0.2 U2AF1 mutation 52 71 1.2 9/30/2005 46,XY,del(7)(q21)[8]/46,XY[12] Poor CD34+ purified MDS bone marrow myelodysplastic syndrome 18 11 RAEB 1 male White 2005-08-15
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown CD34+ purified control bone marrow control unknown unknown unknown unknown unknown unknown unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown CD34+ purified control bone marrow control unknown unknown unknown unknown unknown unknown unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown CD34+ purified control bone marrow control unknown unknown unknown unknown unknown unknown unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown CD34+ purified control bone marrow control unknown unknown unknown unknown unknown unknown unknown

Tags

  • acute myeloid leukemia
  • blood cell
  • bone
  • bone marrow
  • cell
  • leukemia
  • myeloid leukemia
  • peripheral
  • stem cell

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