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Home › Dataset Library › Gene expression profiling in myelodysplastic syndromes

Dataset: Gene expression profiling in myelodysplastic syndromes

Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell...

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Myelodysplastic syndromes (MDS) are a heterogenous group of hematopoietic stem cell disorders characterized by dysplastic blood cell formation and peripheral blood cytopenias. Up to 30% of patients with MDS will progress to a highly chemotherapy-resistant secondary acute myeloid leukemia (sAML). We identified mutations in U2AF1 in MDS patients and patients with U2AF1 mutations are at an increased risk of developing sAML. We identified mutations in U2AF1 in patients with MDS and hypothesized that U2AF1 mutations may represent a novel mechanism that could alter gene expression in MDS. To elucidate gene expression changes associated with U2AF1 mutations, we analyzed the global mRNA expression profile obtained from bone marrow CD34+ cells purified from 5 MDS patients with a U2AF1 mutation, 10 MDS patients without a mutation, and 4 normal donors.

Species:
human

Samples:
19

Source:
E-GEOD-30195

Updated:
Dec.12, 2014

Registered:
Sep.16, 2014


Factors: (via ArrayExpress)
Sample UPN IPSS PLATELET (X10^3/MCL) GENOTYPE AGE ON STUDY WBC (X10^3/MCL) BANKING DATE CYTOGENETICS ANC (X10^3/MCL) CYTOGENETIC RISK GROUP SEX FAB RACE HEMOGLOBIN (G/DL) DISEASE STATE DURATION OF DISEASE (MONTH) BONE MARROW MYELOBLAST(%) CELL TYPE DIAGNOSIS DATE
GSM747424 127804 0.5 195 no U2AF1 mutation 64 2.3 8/3/2005 46, XY[20] 1.4 Good male RA White 8.9 myelodysplastic syndrome 0 2 CD34+ purified MDS bone marrow 2005-08-03
GSM747425 300813 0 243 U2AF1 mutation 41 2.7 7/12/2005 46, XX[20] 1.2 Good female RA White 12.2 myelodysplastic syndrome 3 2 CD34+ purified MDS bone marrow 2005-04-26
GSM747426 321864 2.5 56 U2AF1 mutation 63 1.9 10/3/2005 47,XX,+8[20] 0.3 Intermediate female RAEB White 9.8 myelodysplastic syndrome 0 12 CD34+ purified MDS bone marrow 2005-10-03
GSM747427 350460 0.5 37 no U2AF1 mutation 30 2.1 11/17/2006 46, XY[20] 1.6 Good male RA Black 7.5 myelodysplastic syndrome 0 4 CD34+ purified MDS bone marrow 2006-11-17
GSM747428 372440 0 123 no U2AF1 mutation 59 2.9 5/5/2006 46,XY[20] 1.4 Good male RA White 13.8 myelodysplastic syndrome 0 2 CD34+ purified MDS bone marrow 5/5/2006
GSM747429 421452 1 22 no U2AF1 mutation 33 3.3 11/4/2005 46,XX[20] 0.9 Good female RAEB White 8.3 myelodysplastic syndrome 2 10 CD34+ purified MDS bone marrow 2005-09-30
GSM747430 431137 2 8 no U2AF1 mutation 54 6.5 8/29/2006 46,XY,add(3)(q25),del(3)(p13),del(5)(q15q31),-6,+8,add(12)(p11.2),add(15)(p11.1), -18,+22[cp4]/44,sl,-8,-20,-22,+mar[cp5]/44,sl1,-del(3),-7,+2mar[cp5]/43,sl1,add(X)(q28),-add(12p),+12,-mar[cp6] 4.6 Poor male RAEB White 8.2 myelodysplastic syndrome 1 7 CD34+ purified MDS bone marrow 2006-07-05
GSM74743 497942 1 24 no U2AF1 mutation 47 4.1 1/18/2006 46,XY,der(1;22)(q10;q10)[4]/46,XY[16] 1.6 Intermediate male RA White 8.6 myelodysplastic syndrome 0 0 CD34+ purified MDS bone marrow 2006-01-18
GSM747432 667720 1 61 no U2AF1 mutation 65 5.1 5/9/2006 46,XX[20] 2.3 Good female RAEB White 8.8 myelodysplastic syndrome 0 10 CD34+ purified MDS bone marrow 2006-05-01
GSM747433 703653 0.5 27 no U2AF1 mutation 20 3 2/2/2005 46,XX[20] 0.6 Good female RA White 8.4 myelodysplastic syndrome 0 0 CD34+ purified MDS bone marrow 2005-02-02
GSM747434 705782 1 28 no U2AF1 mutation 34 3.3 8/4/2006 46,XY[20] 1.7 Good male RAEB White 9.7 myelodysplastic syndrome 0 5 CD34+ purified MDS bone marrow 2006-08-04
GSM747435 843623 1 64 U2AF1 mutation 59 0.7 3/3/2003 46,XY,del(20)(q11.2q13.3)[2]/46,XY[18] 0.4 Good male RAEB White 9.7 myelodysplastic syndrome 0 6 CD34+ purified MDS bone marrow 2003-03-03
GSM747436 917011 0.5 107 U2AF1 mutation 80 3.3 6/2/2006 46,XY,del(20)(q11.2)[12]/46,XY[8] 0.5 Good male RA White 8.2 myelodysplastic syndrome 0 0 CD34+ purified MDS bone marrow 2006-06-02
GSM747437 937954 3 35 U2AF1 mutation 50 1.2 9/20/2005 47,XY,+8[1]/47,idem,del(16)(q12.1)[13]/48,idem,+Y,del(16)(q11.1)[5]/46,XY[1] 0.3 Poor male RAEB White 9.9 myelodysplastic syndrome 0 12 CD34+ purified MDS bone marrow 2005-09-12
GSM747438 989739 3 52 U2AF1 mutation 71 1.2 9/30/2005 46,XY,del(7)(q21)[8]/46,XY[12] 0.2 Poor male RAEB White 11 myelodysplastic syndrome 1 18 CD34+ purified MDS bone marrow 2005-08-15
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown unknown CD34+ purified control bone marrow unknown
GSM747439 not specified unknown unknown control unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown control unknown unknown CD34+ purified control bone marrow unknown

Tags

  • acute myeloid leukemia
  • blood cell
  • bone
  • bone marrow
  • cell
  • leukemia
  • myeloid leukemia
  • peripheral
  • stem cell

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