Dataset: Transcription profiling by array of human HT29 colorectal adenocarcinoma cells after treatment with apratoxin A

Total RNA was extracted from apratoxin A or vehicle treated HT29 cells using the RNeasy Mini Kit (Qiagen). Probe values from CEL files...

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Total RNA was extracted from apratoxin A or vehicle treated HT29 cells using the RNeasy Mini Kit (Qiagen). Probe values from CEL files were condensed to probe sets using Rosetta Resolver software. Resolver ANOVA analysis was then performed between groups. Experiment Overall Design: 2 doses were compared to vehicle at 3 time points. Each time point had its own vehicle control

Species:: human
Samples:: 27
Source:: E-GEOD-2742
PubMed:: 16474387
Updated:: Dec.12, 2014
Registered:: Jun.19, 2014

Factors: (via ArrayExpress)

Sample	time	dose	irradiate	temperature	compound
GSE2742GSM92821	12			42	none
GSE2742GSM60137	6	0.01		37	apratoxin A
GSE2742GSM92819	12	100		37	hydrogen peroxide
GSE2742GSM60134	6			37	none
GSE2742GSM60139	12			37	none
GSE2742GSM60134	6			37	none
GSE2742GSM92819	12	100		37	hydrogen peroxide
GSE2742GSM60132	3	0.01		37	apratoxin A
GSE2742GSM60137	6	0.01		37	apratoxin A
GSE2742GSM60141	12	0.002		37	apratoxin A
GSE2742GSM60136	6	0.002		37	apratoxin A
GSE2742GSM60141	12	0.002		37	apratoxin A
GSE2742GSM60139	12			37	none
GSE2742GSM60132	3	0.01		37	apratoxin A
GSE2742GSM60129	3	0.002		37	apratoxin A
GSE2742GSM92821	12			42	none
GSE2742GSM60139	12			37	none
GSE2742GSM60128	3			37	none
GSE2742GSM60136	6	0.002		37	apratoxin A
GSE2742GSM60139	12			37	none
GSE2742GSM60129	3	0.002		37	apratoxin A
GSE2742GSM60128	3			37	none
GSE2742GSM60143	12	0.01		37	apratoxin A
GSE2742GSM60143	12	0.01		37	apratoxin A
GSE2742GSM92822	12		ultraviolet light 50 joules per square meter	37	none
GSE2742GSM92815	12		ultraviolet light 200 joules per square meter	37	none
GSE2742GSM92822	12		ultraviolet light 50 joules per square meter	37	none