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Home › Dataset Library › Transcription profiling by array of Mus musculus colonic mucosa after treatment with DSS

Dataset: Transcription profiling by array of Mus musculus colonic mucosa after treatment with DSS

BACKGROUND: Peroxisome proliferator-activated receptor g (PPAR g) is a nuclear receptor whose activation has been shown to modulate...

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BACKGROUND: Peroxisome proliferator-activated receptor g (PPAR g) is a nuclear receptor whose activation has been shown to modulate macrophage and epithelial cell-mediated inflammation. The objective of this study was to use a systems approach for investigating the mechanism by which the deletion of PPAR g in epithelial cells modulates the severity of dextran-sodium sulfate (DSS)-induced colitis, immune cell distribution and global gene expression. RESULTS: The deficiency of PPAR g in epithelial cells does not significantly affect disease activity or body weight but worsens colon histopathlogy. WT mice have greater CD4+IL10+ T cells and fewer MHC II+ macrophages in mesenteric lymph nodes. Global gene expression analysis reveals greater changes after 7 days of DSS challenge (compared to 2 days). Colonic mucosa from VC- (WT) and VC+ (PPARg knock-out in epithelial cells) mice were sampled at 0 (no DSS), 2, and 7 days of DSS-induced experimental colitis

Species:
mouse

Samples:
22

Source:
E-GEOD-20621

PubMed:
20422041

Updated:
Dec.12, 2014

Registered:
Nov.11, 2014


Factors: (via ArrayExpress)
Sample GENOTYPE TREATMENT DURATION
GSM517944 Villin-CRE+ (PPAR g null epithelial cell) 0
GSM517944 Villin-CRE+ (PPAR g null epithelial cell) 0
GSM517944 Villin-CRE+ (PPAR g null epithelial cell) 0
GSM517947 Villin-CRE+ (PPAR g null epithelial cell) 2
GSM517947 Villin-CRE+ (PPAR g null epithelial cell) 2
GSM517947 Villin-CRE+ (PPAR g null epithelial cell) 2
GSM517947 Villin-CRE+ (PPAR g null epithelial cell) 2
GSM517947 Villin-CRE+ (PPAR g null epithelial cell) 2
GSM517952 Villin-CRE+ (PPAR g null epithelial cell) 7
GSM517952 Villin-CRE+ (PPAR g null epithelial cell) 7
GSM517952 Villin-CRE+ (PPAR g null epithelial cell) 7
GSM517952 Villin-CRE+ (PPAR g null epithelial cell) 7
GSM517956 Villin-CRE- (Wild-type epithelial cell) 0
GSM517956 Villin-CRE- (Wild-type epithelial cell) 0
GSM517956 Villin-CRE- (Wild-type epithelial cell) 0
GSM517959 Villin-CRE- (Wild-type epithelial cell) 2
GSM517959 Villin-CRE- (Wild-type epithelial cell) 2
GSM517959 Villin-CRE- (Wild-type epithelial cell) 2
GSM517962 Villin-CRE- (Wild-type epithelial cell) 7
GSM517962 Villin-CRE- (Wild-type epithelial cell) 7
GSM517962 Villin-CRE- (Wild-type epithelial cell) 7
GSM517962 Villin-CRE- (Wild-type epithelial cell) 7

Tags

  • body
  • cell
  • colitis
  • colon
  • disease
  • dss
  • epithelial cell
  • lymph
  • macrophage
  • mucosa
  • peroxisome

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