BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Transcription profiling by array of human breast cancer cell lines with or without HER2 amplification

Dataset: Transcription profiling by array of human breast cancer cell lines with or without HER2 amplification

Basal gene expression levels were determined by global gene expression profiling of breast cancer cell lines. Molecular subtype was...

Registered by ArrayExpress Uploader
View Dataset

Basal gene expression levels were determined by global gene expression profiling of breast cancer cell lines. Molecular subtype was determined using gene expression and HER2 status assesses by HER2 FISH analysis. Experiment Overall Design: RNA was prepared from cell lines cultured in 10% fetal bovine serum

Species:
human

Samples:
51

Source:
E-GEOD-12777

PubMed:
19567590

Updated:
Dec.12, 2014

Registered:
Sep.10, 2014


Factors: (via ArrayExpress)
Sample cell line cell type genotype
GSE12777GSM320590 BT20 Basal wild_type
GSE12777GSM320591 KPL4 Luminal HER2 amplification
GSE12777GSM320592 MDA-MB-134VI Basal wild_type
GSE12777GSM320593 MX1 Basal wild_type
GSE12777GSM320594 HCC1806 Basal wild_type
GSE12777GSM320595 AU565 Luminal HER2 amplification
GSE12777GSM320596 BT474 Luminal HER2 amplification
GSE12777GSM320597 BT483 Luminal wild_type
GSE12777GSM320598 BT-549 Basal wild_type
GSE12777GSM320599 CAMA-1 Luminal wild_type
GSE12777GSM320600 DU4475 Basal wild_type
GSE12777GSM320601 Hs578T Basal wild_type
GSE12777GSM320602 MCF7 Luminal wild_type
GSE12777GSM320603 MDA-MB-175VII Luminal wild_type
GSE12777GSM320604 MDA-MB-231 Basal wild_type
GSE12777GSM320605 MDA-MB-361 Luminal HER2 amplification
GSE12777GSM320606 MDA-MB-415 Luminal wild_type
GSE12777GSM320607 MDA-MB-435s Basal wild_type
GSE12777GSM320608 MDA-MB-436 Basal wild_type
GSE12777GSM320609 MDA-MB-453 Luminal HER2 amplification
GSE12777GSM320610 MDA-MB-468 Basal wild_type
GSE12777GSM320611 SKBR3 Luminal HER2 amplification
GSE12777GSM320612 T47D Luminal wild_type
GSE12777GSM320613 UACC-812 Luminal HER2 amplification
GSE12777GSM320614 ZR75-1 Luminal wild_type
GSE12777GSM320615 CAL-120 Basal wild_type
GSE12777GSM320616 CAL-51 Basal wild_type
GSE12777GSM320617 CAL85-1 Basal wild_type
GSE12777GSM320618 EFM19 Luminal wild_type
GSE12777GSM320619 EFM-192A Luminal HER2 amplification
GSE12777GSM320620 EVSA-T Luminal wild_type
GSE12777GSM320621 HCC1937 Basal wild_type
GSE12777GSM320622 KPL1 Luminal wild_type
GSE12777GSM320623 HCC202 Luminal HER2 amplification
GSE12777GSM320624 HCC1419 Luminal HER2 amplification
GSE12777GSM320625 HCC70 Basal wild_type
GSE12777GSM320626 HCC1428 Luminal wild_type
GSE12777GSM320627 HCC1954 Basal HER2 amplification
GSE12777GSM320628 HCC2218 Luminal HER2 amplification
GSE12777GSM320629 HCC1500 Luminal wild_type
GSE12777GSM320630 HCC1395 Basal wild_type
GSE12777GSM320631 HCC1143 Basal wild_type
GSE12777GSM320632 HDQ-P1 Basal wild_type
GSE12777GSM320633 ZR75-30 Luminal HER2 amplification
GSE12777GSM320634 MFM-223 Luminal HER2 amplification
GSE12777GSM320635 HCC1569 Basal HER2 amplification
GSE12777GSM320636 HCC38 Basal wild_type
GSE12777GSM320637 CAL-148 Basal wild_type
GSE12777GSM320638 UACC-893 Luminal HER2 amplification
GSE12777GSM320639 JIMT-1 Luminal HER2 amplification
GSE12777GSM320640 SW527 Basal wild_type

Tags

  • basal
  • breast
  • breast cancer
  • cancer
  • cell
  • serum

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2025 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use