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Home › Dataset Library › Expression data of hepatic iNKT cells from pLck-hCD1d transgenic mice › Children's Oncology Group Study 9906 for High-Risk Pediatric ALL

Dataset: Children's Oncology Group Study 9906 for High-Risk Pediatric ALL

PAPER 1:"Identification of novel subgroups of high-risk pediatric precursor B acute lymphoblastic leukemia (B-ALL) by unsupervised...

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PAPER 1:"Identification of novel subgroups of high-risk pediatric precursor B acute lymphoblastic leukemia (B-ALL) by unsupervised microarray analysis: clinical correlates and therapeutic implications. A Children's Oncology Group (COG) study." ABSTRACT We examined gene expression profiles of pre-treatment specimens from 207 patients from the COG P9906 study to identify signatures of children with high risk B-precursor acute lymphoblastic leukemia (ALL) and to determine whether the resulting clusters are associated with either specific clinical features or treatment response characteristics. Four unsupervised clustering methods were utilized to classify patients into similar groups. The different clustering algorithms showed significant overlap in cluster membership. Two clusters contained all cases with either t(1;19)(q23;p13) translocations or MLL rearrangements. The other six clusters were novel and had no recurring chromosomal abnormalities or distinctive clinical features. Members of two of these novel clusters had significant survival differences when compared to the overall 4-year relapse-free survival (RFS) of 61%. These included clusters of patients with either significantly better (94.7%) or worse (21.0%) RFS at 4 years. Children of Hispanic/Latino ethnicity were disproportionately present in the poor outcome cluster. The poor outcome cluster represents a novel biologically distinctive subset of B-precursor ALL that may occur at least as frequently as BCR/ABL. Further molecular characterization of this cluster may lead to the discovery of genomic abnormalities that can be targeted to improve the currently dismal outcome for children with this gene signature. The Sample data have also been used in another study: PAPER 2: "Gene expression classifiers for minimal residual disease and relapse free survival improve outcome prediction and risk classification in children with high risk acute lymphoblastic leukemia. A Children's Oncology Group study". ABSTRACT Background. Nearly 25% of children with B-precursor ALL present with "high-risk" disease (HR-ALL) that is resistant to current therapies. Gene expression profiling may yield molecular classifiers for outcome prediction that can be used to improve risk classification and therapeutic targeting. Methods. Expression profiles were obtained in pre-treatment leukemic samples from 207 uniformly treated children with HR-ALL. Relapse free survival (RFS) was 61% at 4 years and flow cytometric measures of minimal residual disease (MRD) at the end of induction (day 29) were predictive of outcome (P<0.001). Molecular classifiers predictive of RFS and MRD were developed using extensive cross-validation procedures. Results. A 38 gene molecular risk classifier predictive of RFS (MRC-RFS) distinguished two groups in HR-ALL with different relapse risks: low (4 yr RFS: 81%, n=109) vs. high (4 yr RFS: 50%, n=98) (P<0.0001). In multivariate analysis, the best predictor combined MRC-RFS and day 29 flow MRD data, classifying children into low (87% RFS), intermediate (62% RFS), or high risk (29% RFS) groups (P<0.0001). A 21 gene molecular classifier predictive of MRD could effectively substitute for day 29 flow MRD, yielding a combined classifier that similarly distinguished three risk groups at pre-treatment (low: 82% RFS; intermediate: 63% RFS; and high risk: 45% RFS) (P<0.0001). This combined molecular classifier was further validated on an independent cohort of 84 children with HR-ALL (P = 0.006). Conclusions. Molecular classifiers predictive of RFS and MRD can be used to distinguish distinct prognostic groups within HR-ALL, significantly improving risk classification schemes and the ability to prospectively identify children at diagnosis who will respond to or fail current treatment regimens. NOTE: Due to Children's Oncology Group (COG) restrictions, outcome and MRD data cannot be provided as part of the covariate data for this dataset at the present time. If you would like to arrange individual access to this data, please contact COG or the PI of this study, Dr. Cheryl Willman, at the University of New Mexico Cancer Center (cwillman@unm.edu) to arrange a collaboration. Unsupervised clustering and supervised risk classification analyses of 207 diagnostic samples and associated clinical covariate data. See the Summary for greater details. The data were analyzed using Microarray Suite version 5.0 (MAS 5.0) in the Affymetrix Gene Chip Operating Software Version 1.4. Probe masking was used (see 9906_TT207_Affymetrix_probe_mask.msk, linked below as a supplementary file). Otherwise all Affymetrix default parameter settings were used. Global scaling as the normalization method, with the default target intensity of 500, was used.

Species:
human

Samples:
207

Source:
E-GEOD-11877

Updated:
Dec.12, 2014

Registered:
Sep.03, 2014


Factors: (via ArrayExpress)
Sample RACE TRAINING OR TEST SET TESTICULAR INVOLVEMENT BCR-ABL, T(9;22) MLL CONGENITAL ABNORMALITY GENDER AMPLIFICATION SET TEL-AML,T(12;21) HYBRIDIZATION SET BLAST COUNT, % OF SAMPLE, -1=UNAVAILABLE E2A-PBX, T(1;19) SAMPLE VIABILITY, % OF SAMPLE, -1=UNAVAILABLE TISSUE TYPE AGE IN DAYS AT DIAGNOSIS WBC, 1000/MICROLITER CNS STATUS TRISOMY 4 AND 10
GSM299862 White test set Unknown Negative Positive None Female 1 Negative 1 90 Negative 100 peripheral blood 3953 175.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299863 Black or African American training set Negative Negative Negative None Male 1 Negative 1 90 Negative 100 peripheral blood 1976 142.0 No CNS disease Negative
GSM299864 Hispanic or Latino training set Negative Negative Negative None Male 1 Negative 2 70 Negative 99 peripheral blood 5250 220.7 No CNS disease Negative
GSM299865 White test set Negative Negative Negative None Male 1 Negative 2 95 Negative 88 peripheral blood 577 129.0 No CNS disease Negative
GSM299866 Hispanic or Latino training set Negative Negative Negative None Male 1 Negative 3 95 Negative 95 bone marrow 4609 26.0 No CNS disease Negative
GSM299867 White training set Negative Negative Negative None Male 1 Negative 3 80 Negative 68 bone marrow 5289 14.7 No CNS disease Negative
GSM299868 Asian training set Negative Negative Negative None Male 1 Negative 4 -1 Negative 71 bone marrow 3987 68.6 No CNS disease Negative
GSM299869 White test set Negative Negative Negative None Male 1 Negative 4 90 Negative 98 bone marrow 4856 21.4 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299870 White test set Negative Negative Negative None Male 1 Negative 4 1 Negative 99 bone marrow 4678 2.4 No CNS disease Negative
GSM29987 White training set Negative Negative Negative Unknown Male 1 Negative 1 75 Negative 68 bone marrow 796 21.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299872 White training set Unknown Negative Positive None Female 1 Negative 1 85 Negative 100 peripheral blood 4071 125.8 No CNS disease Negative
GSM299873 White training set Negative Negative Negative Unknown Male 1 Negative 2 95 Negative 99 bone marrow 5223 29.9 No CNS disease Negative
GSM299874 Hispanic or Latino training set Unknown Negative Negative Unknown Female 1 Negative 3 95 Negative 99 peripheral blood 5118 217.2 No CNS disease Negative
GSM299875 unknown training set Negative Negative Negative None Male 1 Negative 3 90 Negative 97 peripheral blood 5219 180.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299876 White training set Unknown Negative Negative Downs Female 1 Negative 4 95 Negative 98 bone marrow 1429 118.0 No CNS disease Negative
GSM299877 White test set Unknown Negative Negative Unknown Female 1 Negative 1 95 Negative 97 peripheral blood 3179 314.8 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299878 White test set Unknown Negative Negative None Female 1 Negative 1 -1 Negative 58 bone marrow 1450 5.2 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299879 White training set Negative Negative Negative None Male 1 Negative 1 95 Negative 91 bone marrow 5278 113.5 No CNS disease Negative
GSM299880 White training set Negative Negative Negative None Male 1 Negative 2 85 Positive 98 bone marrow 5330 5.8 No CNS disease Negative
GSM29988 Hispanic or Latino test set Unknown Negative Negative Unknown Female 1 Negative 4 90 Negative 99 peripheral blood 4861 592.6 No CNS disease Negative
GSM299882 White training set Unknown Negative Negative None Female 1 Negative 1 95 Negative 80 peripheral blood 428 248.0 No CNS disease Negative
GSM299883 White training set Negative Negative Negative None Male 1 Negative 1 95 Negative 97 bone marrow 4722 4.4 No CNS disease Negative
GSM299884 White test set Negative Negative Negative Unknown Male 1 Negative 2 95 Negative 99 bone marrow 3587 72.2 No CNS disease Negative
GSM299885 White test set Negative Negative Positive None Female 1 Negative 2 90 Negative 98 peripheral blood 5431 133.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299886 Hispanic or Latino training set Positive Negative Negative None Male 1 Negative 2 70 Negative 98 bone marrow 3444 5.0 No CNS disease Negative
GSM299887 Other test set Negative Negative Negative None Male 1 Negative 3 90 Negative 99 peripheral blood 862 194.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299888 Hispanic or Latino training set Negative Negative Negative None Male 1 Negative 3 90 Negative 97 bone marrow 6674 3.8 No CNS disease Negative
GSM299889 White training set Negative Negative Negative None Male 1 Negative 3 95 Negative 70 bone marrow 6323 15.4 No CNS disease Negative
GSM299890 White training set Negative Negative Negative Unknown Male 1 Negative 4 90 Negative 98 bone marrow 6219 16.5 No CNS disease Negative
GSM29989 White training set Negative Negative Negative None Male 1 Positive 4 95 Negative 65 bone marrow 2509 1.7 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299892 Hispanic or Latino training set Unknown Negative Negative None Female 1 Negative 4 95 Positive 100 peripheral blood 1531 196.1 No CNS disease Negative
GSM299893 Hispanic or Latino test set Unknown Negative Negative Unknown Male 1 Negative 1 85 Negative 100 peripheral blood 5516 202.4 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299894 White training set Negative Negative Negative None Male 1 Negative 1 90 Negative 82 bone marrow 5513 2.5 No CNS disease Negative
GSM299895 White training set Negative Negative Negative Unknown Male 1 Negative 2 95 Negative 62 bone marrow 5842 27.4 No CNS disease Negative
GSM299896 White training set Negative Negative Negative Downs Male 1 Negative 3 75 Positive 98 peripheral blood 6496 9.1 No CNS disease Negative
GSM299897 White training set Negative Negative Positive None Male 1 Negative 3 95 Negative 99 peripheral blood 6511 515.0 No CNS disease Negative
GSM299898 Hispanic or Latino training set Negative Negative Negative None Male 1 Negative 4 95 Positive 97 bone marrow 1361 117.2 No CNS disease Negative
GSM299899 White training set Unknown Negative Negative None Female 1 Negative 1 95 Negative 74 bone marrow 835 115.0 No CNS disease Negative
GSM299900 Hispanic or Latino training set Negative Negative Positive None Male 1 Negative 2 95 Negative 99 peripheral blood 4774 246.4 No CNS disease Negative
GSM29990 White training set Unknown Negative Positive None Female 1 Negative 2 95 Negative 95 bone marrow 3311 489.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299902 White training set Negative Negative Negative None Male 1 Negative 3 80 Negative 100 peripheral blood 6331 32.6 No CNS disease Negative
GSM299903 White training set Unknown Negative Positive None Female 1 Negative 3 95 Negative 92 bone marrow 398 135.0 No CNS disease Negative
GSM299904 White test set Negative Negative Negative None Male 1 Negative 3 95 Positive 96 bone marrow 5631 67.2 No CNS disease Negative
GSM299905 White test set Unknown Negative Negative None Female 1 Negative 1 95 Negative 96 bone marrow 944 12.1 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299906 White training set Negative Negative Negative None Male 1 Negative 1 90 Positive 90 bone marrow 4940 8.0 No CNS disease Negative
GSM299907 White training set Negative Negative Negative Downs Female 1 Negative 2 95 Negative 96 bone marrow 5721 88.9 No CNS disease Negative
GSM299908 White training set Negative Negative Negative Unknown Male 1 Negative 3 95 Negative 98 peripheral blood 6114 80.9 No CNS disease Negative
GSM299909 White training set Negative Negative Negative None Male 1 Negative 4 95 Negative 97 bone marrow 5086 36.2 No CNS disease Negative
GSM299910 White test set Negative Negative Negative None Male 1 Negative 4 95 Negative 90 bone marrow 5359 80.8 No CNS disease Negative
GSM2999 White training set Negative Negative Negative None Male 1 Negative 2 90 Negative 95 bone marrow 1167 156.0 No CNS disease Negative
GSM299912 White training set Negative Negative Negative Unknown Female 1 Negative 2 95 Negative 82 peripheral blood 4090 289.3 No CNS disease Negative
GSM299913 White test set Negative Negative Positive None Male 1 Negative 3 95 Negative 90 peripheral blood 792 237.0 No CNS disease Negative
GSM299914 White training set Negative Negative Negative None Male 1 Negative 4 95 Negative 99 bone marrow 6733 81.4 No CNS disease Negative
GSM299915 Asian training set Negative Negative Negative Unknown Male 2 Negative 5 95 Negative 98 bone marrow 2875 351.3 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299916 Hispanic or Latino training set Negative Negative Negative Other Male 2 Positive 5 80 Negative 99 peripheral blood 449 59.9 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299917 White training set Negative Negative Negative Unknown Male 4 Negative 6 95 Negative 100 bone marrow 904 137.8 No CNS disease Negative
GSM299918 White test set Negative Negative Negative None Male 2 Negative 6 90 Negative 98 bone marrow 1426 138.4 No CNS disease Negative
GSM299919 Hispanic or Latino training set Unknown Negative Negative None Female 2 Negative 6 95 Negative 98 peripheral blood 4469 478.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299920 Hispanic or Latino training set Negative Negative Negative None Male 2 Negative 7 95 Negative 88 bone marrow 6266 34.9 No CNS disease Negative
GSM29992 White training set Negative Negative Negative None Male 2 Negative 8 70 Negative 100 bone marrow 6306 22.8 No CNS disease Negative
GSM299922 White training set Unknown Negative Negative None Female 2 Negative 8 90 Negative 100 peripheral blood 727 109.5 No CNS disease Negative
GSM299923 Hispanic or Latino training set Negative Negative Negative None Male 2 Negative 5 95 Negative 99 bone marrow 5867 21.1 No CNS disease Negative
GSM299924 Asian training set Unknown Negative Negative None Female 2 Negative 5 90 Negative 95 bone marrow 6733 102.0 No CNS disease Negative
GSM299925 White training set Negative Negative Negative None Male 4 Negative 6 90 Negative 98 peripheral blood 5495 96.2 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299926 unknown training set Negative Negative Negative None Male 2 Negative 6 95 Negative 99 bone marrow 6063 2.3 No CNS disease Negative
GSM299927 Hispanic or Latino test set Unknown Negative Negative None Female 2 Negative 6 95 Negative 87 bone marrow 5922 27.0 No CNS disease Negative
GSM299928 White training set Unknown Negative Negative Downs Female 2 Negative 7 90 Negative 99 peripheral blood 6922 68.9 No CNS disease Negative
GSM299929 White training set Unknown Negative Negative None Female 2 Negative 8 95 Negative 100 bone marrow 531 119.0 No CNS disease Negative
GSM299930 White test set Unknown Negative Negative Unknown Female 2 Negative 5 95 Negative 97 bone marrow 4106 210.0 No CNS disease Negative
GSM29993 Hispanic or Latino training set Negative Negative Negative None Male 2 Negative 5 95 Negative 91 bone marrow 2027 199.0 No CNS disease Negative
GSM299932 Asian training set Unknown Negative Negative Unknown Female 2 Negative 6 90 Positive 96 peripheral blood 1191 175.5 No CNS disease Negative
GSM299933 Hispanic or Latino test set Unknown Negative Negative None Female 6 Negative 7 95 Negative 94 peripheral blood 5310 92.7 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299934 White training set Negative Negative Negative None Male 2 Negative 7 95 Negative 83 peripheral blood 5163 270.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299935 White test set Unknown Negative Negative None Female 2 Negative 7 95 Positive 66 bone marrow 977 115.1 No CNS disease Negative
GSM299936 White training set Negative Negative Negative Unknown Male 2 Negative 8 95 Negative 89 bone marrow 4807 12.7 No CNS disease Negative
GSM299937 White training set Negative Negative Negative None Male 2 Negative 5 95 Negative 99 peripheral blood 5564 112.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299938 White test set Negative Negative Negative Unknown Male 2 Negative 5 95 Negative 60 bone marrow 4305 40.0 No CNS disease Negative
GSM299939 White training set Unknown Negative Negative Unknown Female 6 Negative 6 95 Negative 94 bone marrow 4717 62.3 No CNS disease Negative
GSM299940 Hispanic or Latino test set Negative Negative Negative None Male 4 Negative 7 95 Negative 99 bone marrow 4657 33.1 No CNS disease Negative
GSM29994 White training set Unknown Negative Negative None Female 2 Positive 7 90 Negative 79 bone marrow 1429 192.0 No CNS disease Negative
GSM299942 Hispanic or Latino training set Negative Negative Negative None Female 4 Negative 8 65 Negative 98 peripheral blood 6413 16.6 No CNS disease Negative
GSM299943 White training set Negative Negative Negative None Female 2 Negative 8 95 Negative 92 peripheral blood 2133 17.5 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299944 Hispanic or Latino test set Unknown Negative Positive Unknown Female 2 Negative 8 70 Negative 69 peripheral blood 434 88.5 No CNS disease Negative
GSM299945 Asian training set Negative Negative Negative Unknown Male 2 Negative 5 90 Negative 87 bone marrow 4935 24.5 No CNS disease Negative
GSM299946 White training set Negative Negative Negative None Female 2 Negative 5 85 Negative 100 peripheral blood 6984 30.4 No CNS disease Negative
GSM299947 White test set Unknown Negative Negative None Female 2 Negative 5 90 Negative 65 bone marrow 1068 190.0 No CNS disease Negative
GSM299948 Hispanic or Latino test set Negative Negative Negative None Male 4 Negative 6 95 Negative 99 bone marrow 5877 66.9 No CNS disease Negative
GSM299949 White training set Negative Negative Positive None Male 6 Negative 7 95 Negative 87 bone marrow 5127 555.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299950 White training set Negative Negative Positive None Male 4 Negative 7 90 Negative 95 bone marrow 410 51.3 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM29995 White training set Negative Negative Negative Unknown Male 2 Negative 7 95 Negative 97 bone marrow 5408 1.2 No CNS disease Negative
GSM299952 Black or African American test set Negative Negative Negative Unknown Male 2 Negative 8 95 Negative 96 bone marrow 2876 142.4 No CNS disease Negative
GSM299953 White training set Negative Negative Negative Unknown Male 2 Negative 8 95 Negative 87 bone marrow 697 110.9 No CNS disease Negative
GSM299954 Hispanic or Latino test set Unknown Negative Negative Downs Female 2 Negative 5 90 Negative 95 peripheral blood 2223 202.0 No CNS disease Negative
GSM299955 White test set Unknown Negative Positive None Female 2 Negative 5 95 Negative 97 peripheral blood 7028 259.8 No CNS disease Negative
GSM299956 White training set Negative Negative Negative None Male 2 Negative 5 -1 Negative 26 bone marrow 5177 166.5 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Unknown
GSM299957 Hispanic or Latino training set Unknown Negative Positive None Female 2 Negative 6 90 Negative 91 peripheral blood 1038 114.0 No CNS disease Negative
GSM299958 Hispanic or Latino test set Unknown Negative Negative Downs Female 2 Negative 6 95 Negative 100 peripheral blood 5008 321.2 No CNS disease Negative
GSM299959 Hispanic or Latino training set Unknown Negative Negative None Female 2 Negative 7 95 Negative 71 bone marrow 5925 19.5 No CNS disease Negative
GSM299960 Hispanic or Latino training set Negative Negative Negative None Male 2 Negative 7 95 Negative 93 peripheral blood 1258 145.0 No CNS disease Negative
GSM29996 Hispanic or Latino test set Unknown Negative Negative None Female 2 Negative 8 90 Positive 85 bone marrow 1956 148.2 No CNS disease Negative
GSM299962 White training set Unknown Negative Positive None Female 4 Negative 6 90 Negative 97 peripheral blood 4560 108.0 No CNS disease Negative
GSM299963 White training set Negative Negative Positive None Male 2 Negative 7 90 Negative 84 peripheral blood 966 37.3 No CNS disease Negative
GSM299964 White test set Negative Negative Negative None Male 2 Unknown 7 95 Negative 100 bone marrow 4585 12.0 No CNS disease Negative
GSM299965 White training set Unknown Negative Negative Unknown Female 2 Negative 5 90 Negative 98 bone marrow 4863 65.8 No CNS disease Negative
GSM299966 White training set Negative Negative Negative None Male 2 Negative 6 95 Negative 100 peripheral blood 369 325.0 No CNS disease Negative
GSM299967 White test set Negative Negative Negative None Male 2 Negative 7 -1 Negative 20 bone marrow 5853 2.3 No CNS disease Negative
GSM299968 White training set Negative Negative Negative None Male 2 Negative 8 80 Negative 99 bone marrow 6335 13.3 No CNS disease Negative
GSM299969 American Indian or Alaska native test set Negative Negative Negative None Male 2 Negative 8 95 Negative 97 peripheral blood 881 106.0 No CNS disease Negative
GSM299970 White training set Unknown Negative Negative None Female 3 Negative 9 95 Negative 100 peripheral blood 2786 105.7 No CNS disease Negative
GSM29997 White training set Negative Negative Negative None Male 3 Negative 10 80 Negative 94 peripheral blood 6306 16.7 No CNS disease Negative
GSM299972 White test set Negative Negative Negative None Male 3 Negative 10 90 Negative 98 bone marrow 2519 112.0 No CNS disease Negative
GSM299973 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 11 95 Negative 66 bone marrow 6142 18.5 No CNS disease Negative
GSM299974 Black or African American test set Negative Negative Negative None Male 3 Negative 11 80 Negative 96 bone marrow 5343 30.2 No CNS disease Negative
GSM299975 White test set Negative Negative Positive None Male 3 Negative 11 90 Negative 96 bone marrow 852 139.0 No CNS disease Negative
GSM299976 Hispanic or Latino training set Negative Negative Positive None Male 3 Negative 12 95 Negative 94 bone marrow 462 17.3 No CNS disease Negative
GSM299977 Black or African American training set Unknown Negative Negative Unknown Female 3 Negative 12 90 Positive 75 peripheral blood 5797 39.6 No CNS disease Negative
GSM299978 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 9 95 Negative 97 peripheral blood 4253 236.4 No CNS disease Negative
GSM299979 Hispanic or Latino training set Unknown Negative Negative None Female 3 Negative 9 75 Negative 99 peripheral blood 705 137.2 No CNS disease Negative
GSM299980 White training set Negative Negative Negative Unknown Male 3 Negative 10 70 Negative 99 peripheral blood 7478 28.0 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM29998 White training set Negative Negative Negative Unknown Male 3 Negative 10 90 Negative 100 peripheral blood 2191 272.0 No CNS disease Negative
GSM299982 Hispanic or Latino training set Unknown Negative Negative None Female 3 Negative 11 90 Negative 98 bone marrow 1275 214.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299983 White test set Negative Negative Negative None Male 3 Negative 11 95 Negative 96 bone marrow 5184 58.0 No CNS disease Negative
GSM299984 Other training set Negative Negative Negative None Male 3 Negative 11 -1 Negative 59 bone marrow 5542 7.9 No CNS disease Negative
GSM299985 White test set Negative Negative Negative None Male 3 Negative 12 95 Negative 64 bone marrow 5242 3.4 No CNS disease Negative
GSM299986 White training set Unknown Negative Negative Unknown Female 3 Negative 12 75 Negative 99 peripheral blood 1313 69.4 No CNS disease Negative
GSM299987 White training set Unknown Negative Negative None Female 3 Negative 9 95 Negative 94 bone marrow 1751 238.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM299988 White training set Unknown Negative Negative None Female 3 Negative 9 90 Negative 98 bone marrow 4329 179.0 No CNS disease Negative
GSM299989 White training set Negative Negative Negative None Male 3 Negative 9 90 Negative 86 bone marrow 976 7.7 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Positive
GSM299990 Hispanic or Latino test set Negative Negative Negative None Female 3 Negative 10 95 Positive 91 bone marrow 5300 98.2 No CNS disease Negative
GSM29999 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 11 90 Negative 81 bone marrow 4307 44.9 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299992 White training set Unknown Negative Negative None Female 3 Negative 12 60 Negative 98 peripheral blood 4324 35.7 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM299993 White test set Unknown Negative Negative Unknown Female 3 Negative 9 95 Positive 97 bone marrow 1033 118.1 No CNS disease Negative
GSM299994 Hispanic or Latino test set Negative Negative Negative None Male 3 Negative 9 -1 Negative 31 bone marrow 6052 6.4 No CNS disease Negative
GSM299995 White training set Negative Unknown Negative Unknown Male 3 Unknown 10 95 Negative 85 bone marrow 4157 77.6 No CNS disease Negative
GSM299996 Asian training set Unknown Negative Negative None Male 3 Negative 11 90 Positive 64 bone marrow 5025 73.1 No CNS disease Negative
GSM299997 White training set Negative Negative Negative None Male 3 Negative 12 95 Negative 99 bone marrow 6263 1.0 No CNS disease Negative
GSM299998 White training set Negative Negative Positive None Male 3 Negative 9 90 Negative 96 bone marrow 5664 22.0 No CNS disease Negative
GSM299999 Other test set Negative Negative Negative None Male 3 Negative 9 95 Negative 95 bone marrow 4776 1.3 No CNS disease Negative
GSM300000 White training set Unknown Negative Negative None Female 3 Negative 10 95 Negative 99 peripheral blood 2192 209.6 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM30000 Black or African American training set Negative Negative Negative None Male 3 Negative 11 95 Negative 94 bone marrow 5954 15.5 No CNS disease Negative
GSM300002 White training set Negative Negative Negative None Male 3 Negative 11 95 Negative 67 bone marrow 2038 193.0 No CNS disease Negative
GSM300003 White training set Unknown Negative Negative None Female 3 Negative 12 95 Negative 96 bone marrow 6032 59.2 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Positive
GSM300004 White training set Positive Negative Negative Unknown Male 3 Negative 12 85 Negative 98 peripheral blood 655 9.8 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300005 White training set Negative Negative Negative None Male 3 Negative 12 90 Negative 94 bone marrow 4759 2.4 No CNS disease Negative
GSM300006 Hispanic or Latino test set Unknown Negative Negative Unknown Female 3 Negative 9 95 Negative 97 bone marrow 2769 3.0 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM300007 American Indian or Alaska native training set Unknown Negative Negative None Male 3 Negative 9 40 Negative 94 peripheral blood 4972 6.3 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM300008 Black or African American test set Negative Negative Negative Unknown Male 3 Negative 9 95 Negative 98 bone marrow 4815 31.4 No CNS disease Negative
GSM300009 White test set Negative Negative Negative None Male 3 Negative 10 95 Negative 98 peripheral blood 6315 245.0 No CNS disease Negative
GSM300010 White training set Negative Negative Negative Downs Male 3 Negative 10 95 Negative 95 bone marrow 4276 24.4 No CNS disease Negative
GSM3000 White training set Negative Negative Negative None Male 3 Negative 10 95 Negative 99 peripheral blood 5759 33.9 No CNS disease Negative
GSM300012 White test set Negative Negative Negative None Male 3 Negative 11 -1 Negative 44 bone marrow 6487 7.6 No CNS disease Negative
GSM300013 Black or African American test set Negative Negative Negative None Male 3 Negative 11 95 Positive 99 peripheral blood 1771 152.7 No CNS disease Negative
GSM300014 White training set Negative Negative Negative None Male 3 Negative 12 95 Negative 89 bone marrow 515 124.0 No CNS disease Negative
GSM300015 White training set Unknown Negative Negative None Female 3 Negative 12 95 Negative 96 bone marrow 6090 24.8 No CNS disease Negative
GSM300016 White training set Negative Negative Negative Unknown Male 3 Negative 9 95 Negative 99 bone marrow 6633 1.9 No CNS disease Negative
GSM300017 Hispanic or Latino test set Negative Negative Negative None Male 3 Negative 9 95 Negative 97 bone marrow 5194 96.5 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM300018 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 10 95 Negative 96 bone marrow 6468 7.0 No CNS disease Negative
GSM300019 White test set Negative Negative Negative None Male 3 Negative 11 90 Negative 92 bone marrow 6062 17.0 No CNS disease Negative
GSM300020 Other test set Unknown Negative Positive Unknown Female 3 Negative 11 90 Negative 95 bone marrow 777 6.8 No CNS disease Negative
GSM30002 White test set Unknown Negative Negative None Female 3 Negative 12 85 Positive 100 bone marrow 5889 49.6 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300022 White test set Negative Negative Negative None Male 3 Negative 12 95 Negative 95 peripheral blood 893 455.4 No CNS disease Negative
GSM300023 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 9 95 Negative 98 bone marrow 4955 31.5 No CNS disease Negative
GSM300024 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 10 95 Negative 99 peripheral blood 5081 307.0 No CNS disease Negative
GSM300025 Hispanic or Latino training set Unknown Negative Negative Downs Female 3 Negative 10 90 Negative 98 bone marrow 4665 95.2 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300026 Hispanic or Latino training set Negative Negative Negative None Male 3 Negative 11 95 Negative 97 peripheral blood 988 958.8 No CNS disease Negative
GSM300027 White training set Negative Negative Negative None Male 3 Negative 12 -1 Positive 59 bone marrow 5890 9.4 No CNS disease Negative
GSM300028 Black or African American test set Unknown Negative Negative None Female 3 Negative 12 95 Negative 96 bone marrow 6351 13.8 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300029 White test set Negative Negative Negative Unknown Male 4 Negative 13 95 Negative 86 bone marrow 1475 212.3 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300030 Hispanic or Latino training set Negative Negative Negative Unknown Male 4 Negative 13 90 Negative 99 bone marrow 6036 8.8 No CNS disease Negative
GSM30003 White training set Unknown Negative Negative None Female 1 Negative 4 95 Negative 96 bone marrow 5217 135.8 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300032 Black or African American training set Negative Negative Negative None Male 1 Negative 4 95 Negative 97 bone marrow 523 82.9 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM300033 White training set Unknown Negative Negative Unknown Female 3 Negative 11 95 Positive 99 peripheral blood 1011 302.1 No CNS disease Negative
GSM300034 Native Hawaiian or other Pacific Islander test set Negative Negative Negative None Male 3 Negative 11 90 Negative 98 bone marrow 6107 18.3 No CNS disease Negative
GSM300035 White training set Negative Negative Negative None Male 4 Negative 13 95 Negative 95 peripheral blood 768 138.8 No CNS disease Negative
GSM300036 White training set Unknown Negative Negative None Female 4 Negative 13 90 Positive 84 peripheral blood 5670 37.2 No CNS disease Negative
GSM300037 Hispanic or Latino training set Negative Negative Negative None Male 6 Negative 11 95 Negative 99 peripheral blood 6666 114.6 No CNS disease Negative
GSM300038 Hispanic or Latino training set Unknown Negative Negative None Female 4 Negative 13 85 Positive 96 bone marrow 3901 136.6 No CNS disease Negative
GSM300039 White training set Negative Negative Negative None Female 7 Negative 14 -1 Negative 51 peripheral blood 728 138.4 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300040 White test set Unknown Negative Negative None Female 7 Negative 14 95 Negative 79 bone marrow 1058 141.0 No CNS disease Negative
GSM30004 Hispanic or Latino test set Unknown Negative Negative Unknown Female 7 Negative 14 95 Negative 76 bone marrow 1323 30.6 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Positive
GSM300042 Hispanic or Latino training set Negative Negative Negative None Male 7 Negative 14 95 Negative 84 bone marrow 650 102.5 No CNS disease Negative
GSM300043 White test set Negative Negative Negative None Male 8 Negative 15 85 Negative 99 bone marrow 5821 1.9 No CNS disease Negative
GSM300044 White training set Negative Negative Negative Unknown Male 8 Negative 15 40 Negative 100 peripheral blood 6202 2.3 No CNS disease Negative
GSM300045 American Indian or Alaska native training set Negative Negative Negative None Female 8 Negative 15 90 Negative 98 bone marrow 6119 2.3 No CNS disease Negative
GSM300046 White training set Positive Negative Negative None Male 8 Negative 15 60 Negative 99 peripheral blood 4571 6.9 No CNS disease Negative
GSM300047 Hispanic or Latino training set Negative Negative Negative None Male 8 Negative 15 60 Negative 93 peripheral blood 1896 4.1 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Positive
GSM300048 White training set Negative Negative Negative None Female 8 Negative 15 75 Negative 97 bone marrow 7461 3.8 No CNS disease Negative
GSM300049 White test set Negative Negative Negative None Male 8 Negative 15 65 Negative 96 bone marrow 6634 11.1 No CNS disease Negative
GSM300050 White training set Negative Negative Negative None Male 8 Negative 15 80 Negative 83 peripheral blood 5097 6.3 No CNS disease Negative
GSM30005 Hispanic or Latino test set Negative Negative Negative None Male 8 Negative 15 95 Negative 96 bone marrow 5532 5.5 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Negative
GSM300052 Black or African American test set Positive Negative Negative None Male 8 Negative 15 -1 Negative 47 peripheral blood 1914 45.1 < 5 CSF (cerebrospinal fluid) WBC/ul with blasts on cytospin Positive
GSM300053 White training set Negative Negative Negative None Male 8 Negative 15 90 Positive 72 peripheral blood 4434 42.1 No CNS disease Negative
GSM300054 Asian test set Negative Negative Negative None Male 8 Negative 15 50 Positive 93 peripheral blood 4782 4.4 No CNS disease Negative
GSM300055 White test set Negative Negative Negative None Male 8 Negative 15 90 Negative 84 bone marrow 5232 1.1 No CNS disease Negative
GSM300056 Black or African American test set Negative Negative Negative None Male 8 Negative 15 80 Positive 83 peripheral blood 6500 17.8 No CNS disease Negative
GSM300057 White training set Unknown Negative Positive None Male 9 Negative 16 -1 Negative 50 bone marrow 585 7.5 No CNS disease Negative
GSM300058 Black or African American test set Negative Negative Negative None Male 9 Negative 16 95 Negative 98 bone marrow 6539 2.6 No CNS disease Negative
GSM300059 White test set Negative Negative Negative None Female 9 Negative 16 85 Negative 100 bone marrow 5991 5.2 No CNS disease Negative
GSM300060 White training set Negative Negative Negative None Male 9 Negative 16 70 Negative 93 peripheral blood 6479 31.9 No CNS disease Negative
GSM30006 Black or African American training set Negative Negative Negative None Male 9 Negative 16 90 Negative 98 bone marrow 5183 23.0 No CNS disease Negative
GSM300062 White training set Negative Negative Negative None Male 9 Negative 16 -1 Negative 46 peripheral blood 713 110.3 No CNS disease Negative
GSM300063 White test set Unknown Negative Positive None Male 9 Negative 16 90 Negative 82 bone marrow 1704 85.1 No CNS disease Negative
GSM300064 White test set Negative Negative Negative Unknown Male 9 Negative 16 95 Negative 99 bone marrow 5594 2.8 No CNS disease Negative
GSM300065 White training set Negative Negative Negative Unknown Male 9 Negative 16 95 Negative 88 bone marrow 5857 13.3 No CNS disease Negative
GSM300066 Hispanic or Latino test set Unknown Negative Negative None Female 9 Negative 16 95 Positive 81 bone marrow 4017 3.5 > 5 CSF WBC/ul with blasts on cytospin and/or eye involvement, cranial nerve involvement, parenchymal brain involvement Negative
GSM300067 White training set Negative Negative Negative Unknown Male 9 Negative 16 95 Negative 85 bone marrow 4918 5.5 No CNS disease Negative
GSM300068 Hispanic or Latino training set Negative Negative Negative Unknown Male 10 Negative 18 90 Negative 66 bone marrow 5349 147.6 No CNS disease Negative

Tags

  • acute lymphoblastic leukemia
  • cancer
  • disease
  • intermediate
  • leukemia
  • lymphoblastic leukemia

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