Dataset: Large differences in small RNA composition between human biofluids - parotid and SMSL saliva

One goal of Phase 1 of our project is to produce reference profiles of miRNAs and other small RNAs in a large and diverse set of...

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One goal of Phase 1 of our project is to produce reference profiles of miRNAs and other small RNAs in a large and diverse set of biofluids using a systemic approach. This study contains parotid and SMSL saliva samples, and only non-identifying data (no sequencing data, no full alignments, etc.) is openly available.

Species:: human
Samples:: 28
Updated:: Jul.30, 2018
Registered:: Jul.30, 2018

Factors:

Sample	trancriptome_genome-ratio	cell_culture_source	related_dataset_id	fastq_identifier	biosample_metadata_id	exRNA_source	transcriptome_reads	species	anatomical_location	RNA_isolation_kit	profiling_assay	meets_ERCC_QC	reference_genome_reads	condition	biofluid_name
EXR-DERLE1UCSF112	0.628938	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF112_fastq	EXR-DERLE1UCSF112-BS	total cell-free biofluid RNA	639,830	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	1,017,318	Healthy Subject	Saliva
EXR-DERLE1UCSF113	0.841855	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF113_fastq	EXR-DERLE1UCSF113-BS	total cell-free biofluid RNA	709,284	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	842,525	Healthy Subject	Saliva
EXR-DERLE1UCSF115	0.838586	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF115_fastq	EXR-DERLE1UCSF115-BS	total cell-free biofluid RNA	1,586,227	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	1,891,549	Healthy Subject	Saliva
EXR-DERLE1UCSF116	0.835494	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF116_fastq	EXR-DERLE1UCSF116-BS	total cell-free biofluid RNA	1,022,652	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	1,224,009	Healthy Subject	Saliva
EXR-DERLE1UCSF117	0.841221	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF117_fastq	EXR-DERLE1UCSF117-BS	total cell-free biofluid RNA	1,511,751	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	1,797,092	Healthy Subject	Saliva
EXR-DERLE1UCSF118	0.533028	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF118_fastq	EXR-DERLE1UCSF118-BS	total cell-free biofluid RNA	189,509	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	355,533	Healthy Subject	Saliva
EXR-DERLE1UCSF119	0.896185	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF119_fastq	EXR-DERLE1UCSF119-BS	total cell-free biofluid RNA	3,723,549	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	4,154,891	Healthy Subject	Saliva
EXR-DERLE1UCSF120	0.832676	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF120_fastq	EXR-DERLE1UCSF120-BS	total cell-free biofluid RNA	779,038	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	935,584	Healthy Subject	Saliva
EXR-DERLE1UCSF121	0.871457	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF121_fastq	EXR-DERLE1UCSF121-BS	total cell-free biofluid RNA	1,917,211	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	2,200,007	Healthy Subject	Saliva
EXR-DERLE1UCSF122	0.855993	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF122_fastq	EXR-DERLE1UCSF122-BS	total cell-free biofluid RNA	489,549	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	571,908	Healthy Subject	Saliva
EXR-DERLE1UCSF124	0.546119	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF124_fastq	EXR-DERLE1UCSF124-BS	total cell-free biofluid RNA	156,900	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	287,300	Healthy Subject	Saliva
EXR-DERLE1UCSF125	0.865696	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF125_fastq	EXR-DERLE1UCSF125-BS	total cell-free biofluid RNA	950,494	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	1,097,953	Healthy Subject	Saliva
EXR-DERLE1UCSF126	0.742213	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF126_fastq	EXR-DERLE1UCSF126-BS	total cell-free biofluid RNA	404,788	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NA	545,380	Healthy Subject	Saliva
EXR-DERLE1UCSF127	0.494819	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF127_fastq	EXR-DERLE1UCSF127-BS	total cell-free biofluid RNA	546,854	Human	Entire parotid gland	miRNeasy (Qiagen)	small RNA-Seq	NO	1,105,160	Healthy Subject	Sputum
EXR-DERLE1UCSF128	0.759702	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF128_fastq	EXR-DERLE1UCSF128-BS	total cell-free biofluid RNA	444,664	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	585,314	Healthy Subject	Sputum
EXR-DERLE1UCSF129	0.782812	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF129_fastq	EXR-DERLE1UCSF129-BS	total cell-free biofluid RNA	996,469	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,272,935	Healthy Subject	Sputum
EXR-DERLE1UCSF130	0.561359	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF130_fastq	EXR-DERLE1UCSF130-BS	total cell-free biofluid RNA	517,022	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	921,019	Healthy Subject	Sputum
EXR-DERLE1UCSF131	0.506494	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF131_fastq	EXR-DERLE1UCSF131-BS	total cell-free biofluid RNA	162,547	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	320,926	Healthy Subject	Sputum
EXR-DERLE1UCSF132	0.491161	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF132_fastq	EXR-DERLE1UCSF132-BS	total cell-free biofluid RNA	283,974	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	NO	578,169	Healthy Subject	Sputum
EXR-DERLE1UCSF133	0.556543	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF133_fastq	EXR-DERLE1UCSF133-BS	total cell-free biofluid RNA	912,722	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,639,984	Healthy Subject	Sputum
EXR-DERLE1UCSF134	0.805677	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF134_fastq	EXR-DERLE1UCSF134-BS	total cell-free biofluid RNA	653,549	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	811,180	Healthy Subject	Sputum
EXR-DERLE1UCSF135	0.896697	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF135_fastq	EXR-DERLE1UCSF135-BS	total cell-free biofluid RNA	424,464	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	473,364	Healthy Subject	Sputum
EXR-DERLE1UCSF136	0.879078	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF136_fastq	EXR-DERLE1UCSF136-BS	total cell-free biofluid RNA	1,724,454	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,961,663	Healthy Subject	Sputum
EXR-DERLE1UCSF137	0.736676	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF137_fastq	EXR-DERLE1UCSF137-BS	total cell-free biofluid RNA	1,111,470	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,508,763	Healthy Subject	Sputum
EXR-DERLE1UCSF138	0.619573	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF138_fastq	EXR-DERLE1UCSF138-BS	total cell-free biofluid RNA	574,127	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	926,650	Healthy Subject	Sputum
EXR-DERLE1UCSF139	0.654754	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF139_fastq	EXR-DERLE1UCSF139-BS	total cell-free biofluid RNA	446,533	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	681,986	Healthy Subject	Sputum
EXR-DERLE1UCSF140	0.547232	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF140_fastq	EXR-DERLE1UCSF140-BS	total cell-free biofluid RNA	694,660	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,269,406	Healthy Subject	Sputum
EXR-DERLE1UCSF141	0.769673	Not Applicable	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF141_fastq	EXR-DERLE1UCSF141-BS	total cell-free biofluid RNA	877,175	Human	Entire submandibular gland	miRNeasy (Qiagen)	small RNA-Seq	YES	1,139,672	Healthy Subject	Sputum