Dataset: Large differences in small RNA composition between human biofluids - parotid and SMSL saliva

One goal of Phase 1 of our project is to produce reference profiles of miRNAs and other small RNAs in a large and diverse set of...

Registered by ERCC

View Dataset

One goal of Phase 1 of our project is to produce reference profiles of miRNAs and other small RNAs in a large and diverse set of biofluids using a systemic approach. This study contains parotid and SMSL saliva samples, and only non-identifying data (no sequencing data, no full alignments, etc.) is openly available.

Species:: human
Samples:: 28
Updated:: Jul.30, 2018
Registered:: Jul.30, 2018

Factors:

Sample	trancriptome_genome-ratio	transcriptome_reads	related_dataset_id	fastq_identifier	exRNA_source	condition	cell_culture_source	reference_genome_reads	biofluid_name	biosample_metadata_id	RNA_isolation_kit	profiling_assay	meets_ERCC_QC	species	anatomical_location
EXR-DERLE1UCSF112	0.628938	639,830	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF112_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,017,318	Saliva	EXR-DERLE1UCSF112-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF113	0.841855	709,284	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF113_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	842,525	Saliva	EXR-DERLE1UCSF113-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF115	0.838586	1,586,227	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF115_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,891,549	Saliva	EXR-DERLE1UCSF115-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF116	0.835494	1,022,652	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF116_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,224,009	Saliva	EXR-DERLE1UCSF116-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF117	0.841221	1,511,751	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF117_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,797,092	Saliva	EXR-DERLE1UCSF117-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF118	0.533028	189,509	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF118_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	355,533	Saliva	EXR-DERLE1UCSF118-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF119	0.896185	3,723,549	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF119_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	4,154,891	Saliva	EXR-DERLE1UCSF119-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF120	0.832676	779,038	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF120_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	935,584	Saliva	EXR-DERLE1UCSF120-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF121	0.871457	1,917,211	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF121_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	2,200,007	Saliva	EXR-DERLE1UCSF121-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF122	0.855993	489,549	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF122_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	571,908	Saliva	EXR-DERLE1UCSF122-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF124	0.546119	156,900	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF124_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	287,300	Saliva	EXR-DERLE1UCSF124-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF125	0.865696	950,494	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF125_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,097,953	Saliva	EXR-DERLE1UCSF125-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF126	0.742213	404,788	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF126_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	545,380	Saliva	EXR-DERLE1UCSF126-BS	miRNeasy (Qiagen)	small RNA-Seq	NA	Human	Entire parotid gland
EXR-DERLE1UCSF127	0.494819	546,854	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF127_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,105,160	Sputum	EXR-DERLE1UCSF127-BS	miRNeasy (Qiagen)	small RNA-Seq	NO	Human	Entire parotid gland
EXR-DERLE1UCSF128	0.759702	444,664	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF128_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	585,314	Sputum	EXR-DERLE1UCSF128-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF129	0.782812	996,469	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF129_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,272,935	Sputum	EXR-DERLE1UCSF129-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF130	0.561359	517,022	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF130_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	921,019	Sputum	EXR-DERLE1UCSF130-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF131	0.506494	162,547	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF131_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	320,926	Sputum	EXR-DERLE1UCSF131-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF132	0.491161	283,974	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF132_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	578,169	Sputum	EXR-DERLE1UCSF132-BS	miRNeasy (Qiagen)	small RNA-Seq	NO	Human	Entire submandibular gland
EXR-DERLE1UCSF133	0.556543	912,722	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF133_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,639,984	Sputum	EXR-DERLE1UCSF133-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF134	0.805677	653,549	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF134_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	811,180	Sputum	EXR-DERLE1UCSF134-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF135	0.896697	424,464	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF135_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	473,364	Sputum	EXR-DERLE1UCSF135-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF136	0.879078	1,724,454	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF136_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,961,663	Sputum	EXR-DERLE1UCSF136-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF137	0.736676	1,111,470	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF137_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,508,763	Sputum	EXR-DERLE1UCSF137-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF138	0.619573	574,127	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF138_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	926,650	Sputum	EXR-DERLE1UCSF138-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF139	0.654754	446,533	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF139_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	681,986	Sputum	EXR-DERLE1UCSF139-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF140	0.547232	694,660	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF140_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,269,406	Sputum	EXR-DERLE1UCSF140-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland
EXR-DERLE1UCSF141	0.769673	877,175	EXR-DERLE1PHASE1PROT-AN	sample_EXR-DERLE1UCSF141_fastq	total cell-free biofluid RNA	Healthy Subject	Not Applicable	1,139,672	Sputum	EXR-DERLE1UCSF141-BS	miRNeasy (Qiagen)	small RNA-Seq	YES	Human	Entire submandibular gland