Dataset: Chicken Atlas
This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses...
This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses of the domestic chicken (Gallus gallus)
- Species:
- 9031
- Samples:
- 91
- PubMed:
- 30086717
- Updated:
- Nov.27, 2019
- Registered:
- Nov.01, 2017
Factors:
| Sample | age | breed | sample name | organ system |
|---|---|---|---|---|
| 1 | 21 days post-hatch | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 21 days post-hatch) | nervous system |
| 2 | 22 days post-hatch | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 22 days post-hatch) | nervous system |
| 3 | 26 days post-hatch | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 26 days post-hatch) | nervous system |
| 4 | 32 days post-hatch | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 32 days post-hatch) | nervous system |
| 5 | 42 days post-hatch | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 42 days post-hatch) | nervous system |
| 6 | 28 weeks post-hatch | broiler (Xinghua) | pituitary gland (during laying phase) (broiler (Xinghua), 28 weeks post-hatch) | nervous system |
| 7 | 28 weeks post-hatch | layer (Baier Huang) | pituitary gland (during laying phase) (layer (Baier Huang), 28 weeks post-hatch) | nervous system |
| 8 | 28 weeks post-hatch | broiler (Xinghua) | pituitary gland (during incubation phase) (broiler (Xinghua), 28 weeks post-hatch) | nervous system |
| 9 | 28 weeks post-hatch | layer (Baier Huang) | pituitary gland (during incubation phase) (layer (Baier Huang), 28 weeks post-hatch) | nervous system |
| 10 | 5 days embryo | unknown | pallium (unknown, 5 days embryo) | nervous system |
| 11 | 16/17 weeks post-hatch | j-line | cerebellum (j-line, 16/17 weeks post-hatch) | nervous system |
| 12 | unknown (adult) | inbred research line (UCD 001) | cerebellum (inbred research line (UCD 001), unknown (adult)) | nervous system |
| 13 | unknown (adult) | inbred research line (UCD 001) | cerebrum (inbred research line (UCD 001), unknown (adult)) | nervous system |
| 14 | unknown (adult) | inbred research line (UCD 001) | hypothalamus (inbred research line (UCD 001), unknown (adult)) | nervous system |
| 15 | unknown (adult) | inbred research line (UCD 001) | parietal nerve (inbred research line (UCD 001), unknown (adult)) | nervous system |
| 16 | 16/17 weeks post-hatch | j-line | left optic lobe (j-line, 16/17 weeks post-hatch) | nervous system |
| 17 | 18 days embryo | broiler (F1 from Cobb and Hubbard cross) | cornea (broiler (F1 from Cobb and Hubbard cross), 18 days embryo) | nervous system |
| 18 | 8 days embryo | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 8 days embryo) | nervous system |
| 19 | 16 days embryo | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 16 days embryo) | nervous system |
| 20 | 18 days embryo | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 18 days embryo) | nervous system |
| 21 | unknown (adult) | inbred research line (UCD 001) | heart (inbred research line (UCD 001), unknown (adult)) | cardiovascular system |
| 22 | 16/17 weeks post-hatch | j-line | heart muscle (j-line, 16/17 weeks post-hatch) | cardiovascular system |
| 23 | 42 days post-hatch | broiler (Hubbard Flex) | breast muscle (with low Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch) | muscular system |
| 24 | 42 days post-hatch | broiler (Hubbard Flex) | breast muscle (with high Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch) | muscular system |
| 25 | 16/17 weeks post-hatch | j-line | breast muscle (j-line, 16/17 weeks post-hatch) | muscular system |
| 26 | unknown (adult) | inbred research line (UCD 001) | breast muscle (inbred research line (UCD 001), unknown (adult)) | muscular system |
| 27 | 11 days embryo | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 11 days embryo) | muscular system |
| 28 | 16 days embryo | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 16 days embryo) | muscular system |
| 29 | 1 day post-hatch | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 1 day post-hatch) | muscular system |
| 30 | 70 weeks post-hatch | layer (White Leghorn) | tibial bone (incl. marrow) (layer (White Leghorn), 70 weeks post-hatch) | skeletal system |
| 31 | 21 days post-hatch | layer (White Leghorn) | lung (layer (White Leghorn), 21 days post-hatch) | respiratory system |
| 32 | 21 days post-hatch | layer (Fayoumi) | lung (layer (Fayoumi), 21 days post-hatch) | respiratory system |
| 33 | 16/17 weeks post-hatch | j-line | lung (j-line, 16/17 weeks post-hatch) | respiratory system |
| 34 | unknown (adult) | inbred research line (UCD 001) | lung (inbred research line (UCD 001), unknown (adult)) | respiratory system |
| 35 | 16/17 weeks post-hatch | j-line | trachea (j-line, 16/17 weeks post-hatch) | gastrointestinal tract |
| 36 | 16/17 weeks post-hatch | j-line | proventriculus (j-line, 16/17 weeks post-hatch) | gastrointestinal tract |
| 37 | unknown (adult) | inbred research line (UCD 001) | proventriculus (inbred research line (UCD 001), unknown (adult)) | gastrointestinal tract |
| 38 | 16/17 weeks post-hatch | j-line | gizzard fat (j-line, 16/17 weeks post-hatch) | gastrointestinal tract |
| 39 | 16/17 weeks post-hatch | j-line | duodenum (j-line, 16/17 weeks post-hatch) | gastrointestinal tract |
| 40 | 16/17 weeks post-hatch | j-line | ileum (j-line, 16/17 weeks post-hatch) | gastrointestinal tract |
| 41 | unknown (adult) | inbred research line (UCD 001) | kidney (inbred research line (UCD 001), unknown (adult)) | renal system |
| 42 | unknown (adult) | inbred research line (UCD 001) | adrenal gland (inbred research line (UCD 001), unknown (adult)) | renal system |
| 43 | 16/17 weeks post-hatch | j-line | thyroid (j-line, 16/17 weeks post-hatch) | endocrine system |
| 44 | 9 weeks post-hatch | unknown | liver (unknown, 9 weeks post-hatch) | endocrine system |
| 45 | 16 weeks post-hatch | broiler | liver (broiler, 16 weeks post-hatch) | endocrine system |
| 46 | 16/17 weeks post-hatch | j-line | liver (j-line, 16/17 weeks post-hatch) | endocrine system |
| 47 | unknown (adult) | inbred research line (UCD 001) | liver (inbred research line (UCD 001), unknown (adult)) | endocrine system |
| 48 | 16/17 weeks post-hatch | j-line | pancreas (j-line, 16/17 weeks post-hatch) | endocrine system |
| 49 | 42 days post-hatch | unknown | bone marrow derived dendritic cell (unknown, 42 days post-hatch) | immune system |
| 50 | 42 days post-hatch | unknown | bone marrow derived macrophage (unknown, 42 days post-hatch) | immune system |
| 51 | 7 days embryo | unknown | bone marrow derived macrophage + CSF1 (unknown, 7 days embryo) | immune system |
| 52 | 8 weeks post-hatch | broiler | BMDM LPS time course 0 hrs (broiler (Ross 308), 8 weeks post-hatch) | immune system |
| 53 | 8 weeks post-hatch | layer | BMDM LPS time course 0 hrs (layer (NOVOgen Brown), 8 weeks post-hatch) | immune system |
| 54 | 8 weeks post-hatch | broiler | BMDM LPS time course 24 hrs (broiler (Ross 308), 8 weeks post-hatch) | immune system |
| 55 | 8 weeks post-hatch | layer | BMDM LPS time course 24 hrs (layer (NOVOgen Brown), 8 weeks post-hatch) | immune system |
| 56 | immortalised cell line | immortalised cell line | HD11 macrophages (unknown, immortalised cell line) | immune system |
| 57 | 1 day post-hatch | unknown | heterophil (unknown, 1 day post-hatch) | immune system |
| 58 | 16/17 weeks post-hatch | j-line | bursa (j-line, 16/17 weeks post-hatch) | immune system |
| 59 | 35 days post-hatch | broiler | caecal tonsil (chicken caecum has low Campylobacter load) (broiler, 35 days post-hatch) | immune system |
| 60 | 35 days post-hatch | broiler | caecal tonsil (chicken caecum has high Campylobacter load) (broiler, 35 days post-hatch) | immune system |
| 61 | 16/17 weeks post-hatch | j-line | caecal tonsil (j-line, 16/17 weeks post-hatch) | immune system |
| 62 | 22 days post-hatch | broiler | spleen (broiler, 22 days post-hatch) | immune system |
| 63 | 22 days post-hatch | layer (Fayoumi) | spleen (layer (Fayoumi), 22 days post-hatch) | immune system |
| 64 | unknown (adult) | inbred research line (UCD 001) | spleen (inbred research line (UCD 001), unknown (adult)) | immune system |
| 65 | 16/17 weeks post-hatch | j-line | thymus (j-line, 16/17 weeks post-hatch) | immune system |
| 66 | 7 days embryo | unknown | fibroblast (DF1 cell line) (unknown, 7 days embryo) | integumentary system |
| 67 | 14 days embryo | unknown | beak epithelium (unknown, 14 days embryo) | integumentary system |
| 68 | 14 days embryo | unknown | claw epithelium (unknown, 14 days embryo) | integumentary system |
| 69 | 14 days embryo | unknown | feather epithelium (unknown, 14 days embryo) | integumentary system |
| 70 | 14 days embryo | unknown | reticulate scale epithelium (unknown, 14 days embryo) | integumentary system |
| 71 | 16 days embryo | unknown | reticulate scale epithelium (unknown, 16 days embryo) | integumentary system |
| 72 | 14 days embryo | unknown | scutate scale epithelium (unknown, 14 days embryo) | integumentary system |
| 73 | 16 days embryo | unknown | scutate scale epithelium (unknown, 16 days embryo) | integumentary system |
| 74 | unknown (adult) | inbred research line (UCD 001) | adipose (inbred research line (UCD 001), unknown (adult)) | integumentary system |
| 75 | 7 weeks post-hatch | broiler | white adipose (chicken selected for abominal fatness) (broiler, 7 weeks post-hatch) | integumentary system |
| 76 | 7 weeks post-hatch | broiler | white adipose (chicken selected for abominal leanness) (broiler, 7 weeks post-hatch) | integumentary system |
| 77 | 9 weeks post-hatch | unknown | white adipose (unknown, 9 weeks post-hatch) | integumentary system |
| 78 | 16 weeks post-hatch | broiler | white adipose (broiler, 16 weeks post-hatch) | integumentary system |
| 79 | 16/17 weeks post-hatch | j-line | skin (j-line, 16/17 weeks post-hatch) | integumentary system |
| 80 | 16/17 weeks post-hatch | j-line | ovary (j-line, 16/17 weeks post-hatch) | female reproductive system |
| 81 | unknown (adult) | inbred research line (UCD 001) | ovary (inbred research line (UCD 001), unknown (adult)) | female reproductive system |
| 82 | unknown (adult) | inbred research line (UCD 001) | testis (inbred research line (UCD 001), unknown (adult)) | male reproductive system |
| 83 | 7 days embryo | unknown | embryonic cell (unknown, 7 days embryo) | embryo |
| 84 | unknown (embryo) | unknown | embryonic fibroblast (unknown, unknown (embryo)) | embryo |
| 85 | embryo HH4 | unknown | whole embryo (unknown, embryo HH4) | embryo |
| 86 | embryo HH4/5 | unknown | whole embryo (unknown, embryo HH4/5) | embryo |
| 87 | embryo H11 | unknown | whole embryo (unknown, embryo HH11) | embryo |
| 88 | embryo HH14 | unknown | whole embryo (unknown, embryo HH14) | embryo |
| 89 | embryo HH25/26 | unknown | whole embryo (unknown, embryo HH25/26) | embryo |
| 90 | embryo HH32 | unknown | whole embryo (unknown, embryo HH32) | embryo |
| 91 | embryo HH36 | unknown | whole embryo (unknown, embryo HH36) | embryo |