Dataset: Chicken Atlas
This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses...
This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses of the domestic chicken (Gallus gallus)
- Species:
- 9031
- Samples:
- 91
- PubMed:
- 30086717
- Updated:
- Nov.27, 2019
- Registered:
- Nov.01, 2017
Factors:
| Sample | organ system | breed | sample name | age |
|---|---|---|---|---|
| 1 | nervous system | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 21 days post-hatch) | 21 days post-hatch |
| 2 | nervous system | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 22 days post-hatch) | 22 days post-hatch |
| 3 | nervous system | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 26 days post-hatch) | 26 days post-hatch |
| 4 | nervous system | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 32 days post-hatch) | 32 days post-hatch |
| 5 | nervous system | broiler (Ross 708) | pituitary gland (broiler (Ross 708), 42 days post-hatch) | 42 days post-hatch |
| 6 | nervous system | broiler (Xinghua) | pituitary gland (during laying phase) (broiler (Xinghua), 28 weeks post-hatch) | 28 weeks post-hatch |
| 7 | nervous system | layer (Baier Huang) | pituitary gland (during laying phase) (layer (Baier Huang), 28 weeks post-hatch) | 28 weeks post-hatch |
| 8 | nervous system | broiler (Xinghua) | pituitary gland (during incubation phase) (broiler (Xinghua), 28 weeks post-hatch) | 28 weeks post-hatch |
| 9 | nervous system | layer (Baier Huang) | pituitary gland (during incubation phase) (layer (Baier Huang), 28 weeks post-hatch) | 28 weeks post-hatch |
| 10 | nervous system | unknown | pallium (unknown, 5 days embryo) | 5 days embryo |
| 11 | nervous system | j-line | cerebellum (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 12 | nervous system | inbred research line (UCD 001) | cerebellum (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 13 | nervous system | inbred research line (UCD 001) | cerebrum (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 14 | nervous system | inbred research line (UCD 001) | hypothalamus (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 15 | nervous system | inbred research line (UCD 001) | parietal nerve (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 16 | nervous system | j-line | left optic lobe (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 17 | nervous system | broiler (F1 from Cobb and Hubbard cross) | cornea (broiler (F1 from Cobb and Hubbard cross), 18 days embryo) | 18 days embryo |
| 18 | nervous system | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 8 days embryo) | 8 days embryo |
| 19 | nervous system | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 16 days embryo) | 16 days embryo |
| 20 | nervous system | broiler (F1 from Cobb and Hubbard cross) | retina (broiler (F1 from Cobb and Hubbard cross), 18 days embryo) | 18 days embryo |
| 21 | cardiovascular system | inbred research line (UCD 001) | heart (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 22 | cardiovascular system | j-line | heart muscle (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 23 | muscular system | broiler (Hubbard Flex) | breast muscle (with low Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch) | 42 days post-hatch |
| 24 | muscular system | broiler (Hubbard Flex) | breast muscle (with high Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch) | 42 days post-hatch |
| 25 | muscular system | j-line | breast muscle (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 26 | muscular system | inbred research line (UCD 001) | breast muscle (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 27 | muscular system | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 11 days embryo) | 11 days embryo |
| 28 | muscular system | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 16 days embryo) | 16 days embryo |
| 29 | muscular system | broiler (Xinghua) | skeletal muscle leg (broiler (Xinghua), 1 day post-hatch) | 1 day post-hatch |
| 30 | skeletal system | layer (White Leghorn) | tibial bone (incl. marrow) (layer (White Leghorn), 70 weeks post-hatch) | 70 weeks post-hatch |
| 31 | respiratory system | layer (White Leghorn) | lung (layer (White Leghorn), 21 days post-hatch) | 21 days post-hatch |
| 32 | respiratory system | layer (Fayoumi) | lung (layer (Fayoumi), 21 days post-hatch) | 21 days post-hatch |
| 33 | respiratory system | j-line | lung (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 34 | respiratory system | inbred research line (UCD 001) | lung (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 35 | gastrointestinal tract | j-line | trachea (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 36 | gastrointestinal tract | j-line | proventriculus (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 37 | gastrointestinal tract | inbred research line (UCD 001) | proventriculus (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 38 | gastrointestinal tract | j-line | gizzard fat (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 39 | gastrointestinal tract | j-line | duodenum (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 40 | gastrointestinal tract | j-line | ileum (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 41 | renal system | inbred research line (UCD 001) | kidney (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 42 | renal system | inbred research line (UCD 001) | adrenal gland (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 43 | endocrine system | j-line | thyroid (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 44 | endocrine system | unknown | liver (unknown, 9 weeks post-hatch) | 9 weeks post-hatch |
| 45 | endocrine system | broiler | liver (broiler, 16 weeks post-hatch) | 16 weeks post-hatch |
| 46 | endocrine system | j-line | liver (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 47 | endocrine system | inbred research line (UCD 001) | liver (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 48 | endocrine system | j-line | pancreas (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 49 | immune system | unknown | bone marrow derived dendritic cell (unknown, 42 days post-hatch) | 42 days post-hatch |
| 50 | immune system | unknown | bone marrow derived macrophage (unknown, 42 days post-hatch) | 42 days post-hatch |
| 51 | immune system | unknown | bone marrow derived macrophage + CSF1 (unknown, 7 days embryo) | 7 days embryo |
| 52 | immune system | broiler | BMDM LPS time course 0 hrs (broiler (Ross 308), 8 weeks post-hatch) | 8 weeks post-hatch |
| 53 | immune system | layer | BMDM LPS time course 0 hrs (layer (NOVOgen Brown), 8 weeks post-hatch) | 8 weeks post-hatch |
| 54 | immune system | broiler | BMDM LPS time course 24 hrs (broiler (Ross 308), 8 weeks post-hatch) | 8 weeks post-hatch |
| 55 | immune system | layer | BMDM LPS time course 24 hrs (layer (NOVOgen Brown), 8 weeks post-hatch) | 8 weeks post-hatch |
| 56 | immune system | immortalised cell line | HD11 macrophages (unknown, immortalised cell line) | immortalised cell line |
| 57 | immune system | unknown | heterophil (unknown, 1 day post-hatch) | 1 day post-hatch |
| 58 | immune system | j-line | bursa (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 59 | immune system | broiler | caecal tonsil (chicken caecum has low Campylobacter load) (broiler, 35 days post-hatch) | 35 days post-hatch |
| 60 | immune system | broiler | caecal tonsil (chicken caecum has high Campylobacter load) (broiler, 35 days post-hatch) | 35 days post-hatch |
| 61 | immune system | j-line | caecal tonsil (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 62 | immune system | broiler | spleen (broiler, 22 days post-hatch) | 22 days post-hatch |
| 63 | immune system | layer (Fayoumi) | spleen (layer (Fayoumi), 22 days post-hatch) | 22 days post-hatch |
| 64 | immune system | inbred research line (UCD 001) | spleen (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 65 | immune system | j-line | thymus (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 66 | integumentary system | unknown | fibroblast (DF1 cell line) (unknown, 7 days embryo) | 7 days embryo |
| 67 | integumentary system | unknown | beak epithelium (unknown, 14 days embryo) | 14 days embryo |
| 68 | integumentary system | unknown | claw epithelium (unknown, 14 days embryo) | 14 days embryo |
| 69 | integumentary system | unknown | feather epithelium (unknown, 14 days embryo) | 14 days embryo |
| 70 | integumentary system | unknown | reticulate scale epithelium (unknown, 14 days embryo) | 14 days embryo |
| 71 | integumentary system | unknown | reticulate scale epithelium (unknown, 16 days embryo) | 16 days embryo |
| 72 | integumentary system | unknown | scutate scale epithelium (unknown, 14 days embryo) | 14 days embryo |
| 73 | integumentary system | unknown | scutate scale epithelium (unknown, 16 days embryo) | 16 days embryo |
| 74 | integumentary system | inbred research line (UCD 001) | adipose (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 75 | integumentary system | broiler | white adipose (chicken selected for abominal fatness) (broiler, 7 weeks post-hatch) | 7 weeks post-hatch |
| 76 | integumentary system | broiler | white adipose (chicken selected for abominal leanness) (broiler, 7 weeks post-hatch) | 7 weeks post-hatch |
| 77 | integumentary system | unknown | white adipose (unknown, 9 weeks post-hatch) | 9 weeks post-hatch |
| 78 | integumentary system | broiler | white adipose (broiler, 16 weeks post-hatch) | 16 weeks post-hatch |
| 79 | integumentary system | j-line | skin (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 80 | female reproductive system | j-line | ovary (j-line, 16/17 weeks post-hatch) | 16/17 weeks post-hatch |
| 81 | female reproductive system | inbred research line (UCD 001) | ovary (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 82 | male reproductive system | inbred research line (UCD 001) | testis (inbred research line (UCD 001), unknown (adult)) | unknown (adult) |
| 83 | embryo | unknown | embryonic cell (unknown, 7 days embryo) | 7 days embryo |
| 84 | embryo | unknown | embryonic fibroblast (unknown, unknown (embryo)) | unknown (embryo) |
| 85 | embryo | unknown | whole embryo (unknown, embryo HH4) | embryo HH4 |
| 86 | embryo | unknown | whole embryo (unknown, embryo HH4/5) | embryo HH4/5 |
| 87 | embryo | unknown | whole embryo (unknown, embryo HH11) | embryo H11 |
| 88 | embryo | unknown | whole embryo (unknown, embryo HH14) | embryo HH14 |
| 89 | embryo | unknown | whole embryo (unknown, embryo HH25/26) | embryo HH25/26 |
| 90 | embryo | unknown | whole embryo (unknown, embryo HH32) | embryo HH32 |
| 91 | embryo | unknown | whole embryo (unknown, embryo HH36) | embryo HH36 |