Dataset: UH2 40 Samples Seq
Extracellular RNA from the plasma of 40 individuals from the Framingham Heart Study were isolated using miRCURY RNA isolation kit...
Extracellular RNA from the plasma of 40 individuals from the Framingham Heart Study were isolated using miRCURY RNA isolation kit Biofluids (Exiqon). Small RNA Library preparation was done with Ion Total RNA-Seq Kit v2 (Thermo Fisher Scientific) and the samples were sequenced with the Ion Proton. This is a dataset provided from Extracellular RNA Communication consortium (ERCC). More details is available at http://exrna-atlas.org/exat/datasets.
- Species:
- human
- Samples:
- 39
- PubMed:
- 27112789
- Updated:
- Apr.05, 2017
- Registered:
- Apr.04, 2017
Factors:
Sample | Meets ERCC QC? | Biofluid Name | Anatomical Location | Transcriptome Reads | Profiling Assay | Transcriptome Genome Ratio | Reference Genome Reads | Cell Culture Source | Biosample Metadata ID | RNA Isolation Kit | exRNA Source | Condition |
---|---|---|---|---|---|---|---|---|---|---|---|---|
11020 | YES | Plasma | Entire cardiovascular system | 542,550 | smRNA-Seq | 0.896134 | 605,434 | Not Applicable | EXR-JFREE11020-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
11066 | YES | Plasma | Entire cardiovascular system | 269,652 | smRNA-Seq | 0.866619 | 311,154 | Not Applicable | EXR-JFREE11066-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
11095 | YES | Plasma | Entire cardiovascular system | 333,771 | smRNA-Seq | 0.86556 | 385,613 | Not Applicable | EXR-JFREE11095-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
11120 | YES | Plasma | Entire cardiovascular system | 166,607 | smRNA-Seq | 0.906389 | 183,814 | Not Applicable | EXR-JFREE11120-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
11430 | YES | Plasma | Entire cardiovascular system | 731,229 | smRNA-Seq | 0.8688 | 841,645 | Not Applicable | EXR-JFREE11430-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
11579 | YES | Plasma | Entire cardiovascular system | 183,753 | smRNA-Seq | 0.746617 | 246,114 | Not Applicable | EXR-JFREE11579-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
11610 | YES | Plasma | Entire cardiovascular system | 1,007,685 | smRNA-Seq | 0.93647 | 1,076,046 | Not Applicable | EXR-JFREE11610-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10172 | YES | Plasma | Entire cardiovascular system | 276,109 | smRNA-Seq | 0.768581 | 359,245 | Not Applicable | EXR-JFREE10172-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10216 | YES | Plasma | Entire cardiovascular system | 1,500,424 | smRNA-Seq | 0.945584 | 1,586,770 | Not Applicable | EXR-JFREE10216-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
10021 | YES | Plasma | Entire cardiovascular system | 210,235 | smRNA-Seq | 0.83462 | 251,893 | Not Applicable | EXR-JFREE10021-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
12303 | YES | Plasma | Entire cardiovascular system | 211,627 | smRNA-Seq | 0.788773 | 268,299 | Not Applicable | EXR-JFREE12303-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
12616 | YES | Plasma | Entire cardiovascular system | 130,701 | smRNA-Seq | 0.790398 | 165,361 | Not Applicable | EXR-JFREE12616-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
12768 | YES | Plasma | Entire cardiovascular system | 1,249,385 | smRNA-Seq | 0.953922 | 1,309,735 | Not Applicable | EXR-JFREE12768-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
12918 | YES | Plasma | Entire cardiovascular system | 1,095,028 | smRNA-Seq | 0.938385 | 1,166,928 | Not Applicable | EXR-JFREE12918-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
12938 | NO | Plasma | Entire cardiovascular system | 88,318 | smRNA-Seq | 0.716815 | 123,209 | Not Applicable | EXR-JFREE12938-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
13132 | YES | Plasma | Entire cardiovascular system | 177,265 | smRNA-Seq | 0.826711 | 214,422 | Not Applicable | EXR-JFREE13132-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
13170 | NO | Plasma | Entire cardiovascular system | 76,519 | smRNA-Seq | 0.751055 | 101,882 | Not Applicable | EXR-JFREE13170-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
10320 | YES | Plasma | Entire cardiovascular system | 812,926 | smRNA-Seq | 0.946026 | 859,306 | Not Applicable | EXR-JFREE10320-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
13392 | YES | Plasma | Entire cardiovascular system | 243,884 | smRNA-Seq | 0.838254 | 290,943 | Not Applicable | EXR-JFREE13392-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
13464 | NO | Plasma | Entire cardiovascular system | 59,670 | smRNA-Seq | 0.713995 | 83,572 | Not Applicable | EXR-JFREE13464-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
13713 | YES | Plasma | Entire cardiovascular system | 148,945 | smRNA-Seq | 0.822151 | 181,165 | Not Applicable | EXR-JFREE13713-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
14043 | YES | Plasma | Entire cardiovascular system | 177,837 | smRNA-Seq | 0.834504 | 213,105 | Not Applicable | EXR-JFREE14043-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
14820 | YES | Plasma | Entire cardiovascular system | 175,885 | smRNA-Seq | 0.80196 | 219,319 | Not Applicable | EXR-JFREE14820-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
14912 | NO | Plasma | Entire cardiovascular system | 46,449 | smRNA-Seq | 0.701753 | 66,190 | Not Applicable | EXR-JFREE14912-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10500 | NO | Plasma | Entire cardiovascular system | 90,586 | smRNA-Seq | 0.689864 | 131,310 | Not Applicable | EXR-JFREE10500-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
15237 | YES | Plasma | Entire cardiovascular system | 151,001 | smRNA-Seq | 0.822248 | 183,644 | Not Applicable | EXR-JFREE15237-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10543 | NO | Plasma | Entire cardiovascular system | 91,811 | smRNA-Seq | 0.757923 | 121,135 | Not Applicable | EXR-JFREE10543-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10590 | YES | Plasma | Entire cardiovascular system | 150,126 | smRNA-Seq | 0.842146 | 178,266 | Not Applicable | EXR-JFREE10590-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
16077 | YES | Plasma | Entire cardiovascular system | 1,378,861 | smRNA-Seq | 0.953763 | 1,445,706 | Not Applicable | EXR-JFREE16077-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
16136 | YES | Plasma | Entire cardiovascular system | 156,354 | smRNA-Seq | 0.825893 | 189,315 | Not Applicable | EXR-JFREE16136-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
16355 | YES | Plasma | Entire cardiovascular system | 727,498 | smRNA-Seq | 0.908901 | 800,415 | Not Applicable | EXR-JFREE16355-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
16684 | YES | Plasma | Entire cardiovascular system | 294,681 | smRNA-Seq | 0.825828 | 356,831 | Not Applicable | EXR-JFREE16684-BS32 | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
16758 | YES | Plasma | Entire cardiovascular system | 185,579 | smRNA-Seq | 0.766947 | 241,971 | Not Applicable | EXR-JFREE16758-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
10676 | YES | Plasma | Entire cardiovascular system | 1,031,504 | smRNA-Seq | 0.943756 | 1,092,977 | Not Applicable | EXR-JFREE10676-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
16926 | YES | Plasma | Entire cardiovascular system | 178,532 | smRNA-Seq | 0.868186 | 205,638 | Not Applicable | EXR-JFREE16926-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
17138 | YES | Plasma | Entire cardiovascular system | 295,317 | smRNA-Seq | 0.804494 | 367,084 | Not Applicable | EXR-JFREE17138-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
17226 | YES | Plasma | Entire cardiovascular system | 466,364 | smRNA-Seq | 0.765965 | 608,858 | Not Applicable | EXR-JFREE17226-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |
10728 | YES | Plasma | Entire cardiovascular system | 128,725 | smRNA-Seq | 0.770573 | 167,051 | Not Applicable | EXR-JFREE10728-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Cardiovascular Disorder |
17326 | YES | Plasma | Entire cardiovascular system | 139,705 | smRNA-Seq | 0.750356 | 186,185 | Not Applicable | EXR-JFREE17326-BS | miRcury biofluids (Exiqon) | total cell-free biofluid RNA | Healthy Control |