Dataset: Sheep Atlas
This dataset displays a survey of gene expression across a wide range of tissues taken from the domestic sheep (Ovis aries) performed by...
This dataset displays a survey of gene expression across a wide range of tissues taken from the domestic sheep (Ovis aries) performed by researchers at The Roslin Institute, Edinburgh. The study was designed to generate a high resolution transcriptomic atlas of gene expression in the sheep and includes samples from multiple developmental time points. Data is given as transcripts per million (TPM) from Illumina RNA-Seq paired end libraries.
- Species:
- 9940
- Samples:
- 109
- Updated:
- May.06, 2017
- Registered:
- Apr.25, 2017
Factors:
| Sample | age | organ_system | condition | sample_name |
|---|---|---|---|---|
| cerebellum (adult) | adult | central nervous system | cerebellum (adult) | cerebellum (adult) |
| hippocampus (adult) | adult | central nervous system | hippocampus (adult) | hippocampus (adult) |
| aortic valve (adult) | adult | cardiovascular system | aortic valve (adult) | aortic valve (adult) |
| left atrioventricular valve (adult) | adult | cardiovascular system | left atrioventricular valve (adult) | left atrioventricular valve (adult) |
| right atrioventricular valve (adult) | adult | cardiovascular system | right atrioventricular valve (adult) | right atrioventricular valve (adult) |
| left auricle (adult) | adult | cardiovascular system | left auricle (adult) | left auricle (adult) |
| right auricle (adult) | adult | cardiovascular system | right auricle (adult) | right auricle (adult) |
| left ventricle (adult) | adult | cardiovascular system | left ventricle (adult) | left ventricle (adult) |
| right ventricle (adult) | adult | cardiovascular system | right ventricle (adult) | right ventricle (adult) |
| skeletal muscle bicep (adult) | adult | musculoskeletal system | skeletal muscle bicep (adult) | skeletal muscle bicep (adult) |
| skeletal muscle longitudinal dorsal (adult) | adult | musculoskeletal system | skeletal muscle longitudinal dorsal (adult) | skeletal muscle longitudinal dorsal (adult) |
| thoracic oesophageal muscle (adult) | adult | musculoskeletal system | thoracic oesophageal muscle (adult) | thoracic oesophageal muscle (adult) |
| lung (adult) | adult | respiratory system | lung (adult) | lung (adult) |
| thoracic oesophageal tissue (adult) | adult | gastrointestinal tract | thoracic oesophageal tissue (adult) | thoracic oesophageal tissue (adult) |
| reticulum (lamb/newborn) | lamb/newborn | gastrointestinal tract | reticulum (lamb/newborn) | reticulum (lamb/newborn) |
| reticulum (lamb/1 week) | lamb/1 week | gastrointestinal tract | reticulum (lamb/1 week) | reticulum (lamb/1 week) |
| reticulum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | reticulum (lamb/8 weeks) | reticulum (lamb/8 weeks) |
| reticulum (adult) | adult | gastrointestinal tract | reticulum (adult) | reticulum (adult) |
| rumen (lamb/newborn) | lamb/newborn | gastrointestinal tract | rumen (lamb/newborn) | rumen (lamb/newborn) |
| rumen (lamb/1 week) | lamb/1 week | gastrointestinal tract | rumen (lamb/1 week) | rumen (lamb/1 week) |
| rumen (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | rumen (lamb/8 weeks) | rumen (lamb/8 weeks) |
| rumen (adult) | adult | gastrointestinal tract | rumen (adult) | rumen (adult) |
| omasum (lamb/newborn) | lamb/newborn | gastrointestinal tract | omasum (lamb/newborn) | omasum (lamb/newborn) |
| omasum (lamb/1 week) | lamb/1 week | gastrointestinal tract | omasum (lamb/1 week) | omasum (lamb/1 week) |
| omasum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | omasum (lamb/8 weeks) | omasum (lamb/8 weeks) |
| omasum (adult) | adult | gastrointestinal tract | omasum (adult) | omasum (adult) |
| abomasum (lamb/newborn) | lamb/newborn | gastrointestinal tract | abomasum (lamb/newborn) | abomasum (lamb/newborn) |
| abomasum (lamb/1 week) | lamb/1 week | gastrointestinal tract | abomasum (lamb/1 week) | abomasum (lamb/1 week) |
| abomasum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | abomasum (lamb/8 weeks) | abomasum (lamb/8 weeks) |
| abomasum (adult) | adult | gastrointestinal tract | abomasum (adult) | abomasum (adult) |
| pylorus (lamb/newborn) | lamb/newborn | gastrointestinal tract | pylorus (lamb/newborn) | pylorus (lamb/newborn) |
| pylorus (lamb/1 week) | lamb/1 week | gastrointestinal tract | pylorus (lamb/1 week) | pylorus (lamb/1 week) |
| pylorus (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | pylorus (lamb/8 weeks) | pylorus (lamb/8 weeks) |
| pylorus (adult) | adult | gastrointestinal tract | pylorus (adult) | pylorus (adult) |
| duodenum (lamb/newborn) | lamb/newborn | gastrointestinal tract | duodenum (lamb/newborn) | duodenum (lamb/newborn) |
| duodenum (lamb/1 week) | lamb/1 week | gastrointestinal tract | duodenum (lamb/1 week) | duodenum (lamb/1 week) |
| duodenum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | duodenum (lamb/8 weeks) | duodenum (lamb/8 weeks) |
| duodenum (adult) | adult | gastrointestinal tract | duodenum (adult) | duodenum (adult) |
| jejunum (lamb/newborn) | lamb/newborn | gastrointestinal tract | jejunum (lamb/newborn) | jejunum (lamb/newborn) |
| jejunum (lamb/1 week) | lamb/1 week | gastrointestinal tract | jejunum (lamb/1 week) | jejunum (lamb/1 week) |
| jejunum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | jejunum (lamb/8 weeks) | jejunum (lamb/8 weeks) |
| jejunum (adult) | adult | gastrointestinal tract | jejunum (adult) | jejunum (adult) |
| ileum (lamb/newborn) | lamb/newborn | gastrointestinal tract | ileum (lamb/newborn) | ileum (lamb/newborn) |
| ileum (lamb/1 week) | lamb/1 week | gastrointestinal tract | ileum (lamb/1 week) | ileum (lamb/1 week) |
| ileum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | ileum (lamb/8 weeks) | ileum (lamb/8 weeks) |
| ileum (adult) | adult | gastrointestinal tract | ileum (adult) | ileum (adult) |
| peyers patch (lamb/newborn) | lamb/newborn | gastrointestinal tract | peyers patch (lamb/newborn) | peyers patch (lamb/newborn) |
| peyers patch (lamb/1 week) | lamb/1 week | gastrointestinal tract | peyers patch (lamb/1 week) | peyers patch (lamb/1 week) |
| peyers patch (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | peyers patch (lamb/8 weeks) | peyers patch (lamb/8 weeks) |
| peyers patch (adult) | adult | gastrointestinal tract | peyers patch (adult) | peyers patch (adult) |
| caecum (lamb/newborn) | lamb/newborn | gastrointestinal tract | caecum (lamb/newborn) | caecum (lamb/newborn) |
| caecum (lamb/1 week) | lamb/1 week | gastrointestinal tract | caecum (lamb/1 week) | caecum (lamb/1 week) |
| caecum (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | caecum (lamb/8 weeks) | caecum (lamb/8 weeks) |
| caecum (adult) | adult | gastrointestinal tract | caecum (adult) | caecum (adult) |
| colon spiral (lamb/newborn) | lamb/newborn | gastrointestinal tract | colon spiral (lamb/newborn) | colon spiral (lamb/newborn) |
| colon spiral (lamb/1 week) | lamb/1 week | gastrointestinal tract | colon spiral (lamb/1 week) | colon spiral (lamb/1 week) |
| colon spiral (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | colon spiral (lamb/8 weeks) | colon spiral (lamb/8 weeks) |
| colon spiral (adult) | adult | gastrointestinal tract | colon spiral (adult) | colon spiral (adult) |
| colon distal (adult) | adult | gastrointestinal tract | colon distal (adult) | colon distal (adult) |
| colon large (lamb/newborn) | lamb/newborn | gastrointestinal tract | colon large (lamb/newborn) | colon large (lamb/newborn) |
| colon large (lamb/1 week) | lamb/1 week | gastrointestinal tract | colon large (lamb/1 week) | colon large (lamb/1 week) |
| colon large (lamb/8 weeks) | lamb/8 weeks | gastrointestinal tract | colon large (lamb/8 weeks) | colon large (lamb/8 weeks) |
| rectum (adult) | adult | gastrointestinal tract | rectum (adult) | rectum (adult) |
| liver (adult) | adult | gastrointestinal tract | liver (adult) | liver (adult) |
| kidney cortex (adult) | adult | renal system | kidney cortex (adult) | kidney cortex (adult) |
| kidney medulla (adult) | adult | renal system | kidney medulla (adult) | kidney medulla (adult) |
| adrenal gland cortex (adult) | adult | endocrine system | adrenal gland cortex (adult) | adrenal gland cortex (adult) |
| adrenal gland medulla (adult) | adult | endocrine system | adrenal gland medulla (adult) | adrenal gland medulla (adult) |
| pituitary gland (adult) | adult | endocrine system | pituitary gland (adult) | pituitary gland (adult) |
| salivary gland (adult) | adult | endocrine system | salivary gland (adult) | salivary gland (adult) |
| thyroid (adult) | adult | endocrine system | thyroid (adult) | thyroid (adult) |
| tonsil (adult) | adult | immune system | tonsil (adult) | tonsil (adult) |
| thymus (adult) | adult | immune system | thymus (adult) | thymus (adult) |
| spleen (adult) | adult | immune system | spleen (adult) | spleen (adult) |
| submandibular lymph node (adult) | adult | immune system | submandibular lymph node (adult) | submandibular lymph node (adult) |
| prescapular lymph node (adult) | adult | immune system | prescapular lymph node (adult) | prescapular lymph node (adult) |
| mesenteric lymph node (adult) | adult | immune system | mesenteric lymph node (adult) | mesenteric lymph node (adult) |
| popliteal lymph node (adult) | adult | immune system | popliteal lymph node (adult) | popliteal lymph node (adult) |
| hemolymph node (adult) | adult | immune system | hemolymph node (adult) | hemolymph node (adult) |
| blood leukocytes (adult) | adult | immune system | blood leukocytes (adult) | blood leukocytes (adult) |
| alveolar macrophage (adult) | adult | immune system | alveolar macrophage (adult) | alveolar macrophage (adult) |
| PBMC (adult) | adult | immune system | PBMC (adult) | PBMC (adult) |
| MDM (adult) | adult | immune system | MDM (adult) | MDM (adult) |
| BMDM LPS time course 0 hrs (adult) | adult | immune system | BMDM LPS time course 0 hrs (adult) | BMDM LPS time course 0 hrs (adult) |
| BMDM LPS time course 2 hrs (adult) | adult | immune system | BMDM LPS time course 2 hrs (adult) | BMDM LPS time course 2 hrs (adult) |
| BMDM LPS time course 4 hrs (adult) | adult | immune system | BMDM LPS time course 4 hrs (adult) | BMDM LPS time course 4 hrs (adult) |
| BMDM LPS time course 7 hrs (adult) | adult | immune system | BMDM LPS time course 7 hrs (adult) | BMDM LPS time course 7 hrs (adult) |
| BMDM LPS time course 24 hrs (adult) | adult | immune system | BMDM LPS time course 24 hrs (adult) | BMDM LPS time course 24 hrs (adult) |
| epididymis (adult) | adult | male reproductive system | epididymis (adult) | epididymis (adult) |
| vas deferens (adult) | adult | male reproductive system | vas deferens (adult) | vas deferens (adult) |
| testes (adult) | adult | male reproductive system | testes (adult) | testes (adult) |
| mammary gland (adult) | adult | female reproductive system | mammary gland (adult) | mammary gland (adult) |
| caruncle (adult) | adult | female reproductive system | caruncle (adult) | caruncle (adult) |
| caruncle (adult/23 days gestation) | adult/23 days gestation | female reproductive system | caruncle (adult/23 days gestation) | caruncle (adult/23 days gestation) |
| intercaruncular tissue (adult) | adult | female reproductive system | intercaruncular tissue (adult) | intercaruncular tissue (adult) |
| fallopian tube (adult) | adult | female reproductive system | fallopian tube (adult) | fallopian tube (adult) |
| ovary (adult) | adult | female reproductive system | ovary (adult) | ovary (adult) |
| ovary (adult/23 days gestation) | adult/23 days gestation | female reproductive system | ovary (adult/23 days gestation) | ovary (adult/23 days gestation) |
| ovary (adult/35 days gestation) | adult/35 days gestation | female reproductive system | ovary (adult/35 days gestation) | ovary (adult/35 days gestation) |
| ovary (adult/100 days gestation) | adult/100 days gestation | female reproductive system | ovary (adult/100 days gestation) | ovary (adult/100 days gestation) |
| placenta (adult/35 days gestation) | adult/35 days gestation | female reproductive system | placenta (adult/35 days gestation) | placenta (adult/35 days gestation) |
| placenta (adult/100 days gestation) | adult/100 days gestation | female reproductive system | placenta (adult/100 days gestation) | placenta (adult/100 days gestation) |
| blastocyst | blastocyst | blastocyst | blastocyst | blastocyst |
| embryonic fibroblast | embryo/35 days | embryonic | embryonic fibroblast | embryonic fibroblast |
| whole embryo (23 days) | embryo/23 days | embryonic | whole embryo (23 days) | whole embryo (23 days) |
| embryonic brain (35 days) | embryo/35 days | embryonic | embryonic brain (35 days) | embryonic brain (35 days) |
| embryonic liver (35 days) | embryo/35 days | embryonic | embryonic liver (35 days) | embryonic liver (35 days) |
| embryonic liver (100 days) | embryo/100 days | embryonic | embryonic liver (100 days) | embryonic liver (100 days) |
| embryonic ovary (100 days) | embryo/100 days | embryonic | embryonic ovary (100 days) | embryonic ovary (100 days) |