000None8.0TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families. TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast (S. cerevisiae and S. pombe) and plant (A. thaliana) to reveal these distant members. TreeFam is also an ortholog database. Unlike other pairwise alignment based ones, TreeFam infers orthologs by means of gene trees. It fits a gene tree into the universal species tree and finds historical duplications, speciations and losses events. TreeFam uses this information to evaluate tree building, guide manual curation, and infer complex ortholog and paralog relations. The basic elements of TreeFam are gene families that can be divided into two parts: TreeFam-A and TreeFam-B families. TreeFam-B families are automatically created. They might contain errors given complex phylogenies. TreeFam-A families are manually curated from TreeFam-B ones. Family names and node names are assigned at the same time. The ultimate goal of TreeFam is to present a curated resource for all the families.familiesorthologparalogphylogenetictreehttp://www.treefam.org/cgi-bin/TFseq.pl?id={{EnsemblGene}}2009-05-06 21:49:098.062009-05-06 21:49:09442www.treefam.orgbiogpsusersTreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives...pluginivaagenes/profile/877/ivaagenesIan Vaagenespubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigTreefam000True2009-09-03 21:54:06http://kb.psi-structuralgenomics.org/KB/search.do?SSIDSearch=KeywordSearch&query={{Symbol}}2010-06-09 16:56:428.078.0512kb.psi-structuralgenomics.orgbiogpsusersNo summary provided.pluginkiraanthony/profile/1373/kiraanthonyKira Anthonypubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigPSI Structural Genomics Knowledgebase000None8.0Search by gene symbol at Google.genegoogleliteraturesearchsymbolhttp://www.google.com/custom?q={{symbol}}2013-06-27 17:33:138.072008-06-04 18:41:1568www.google.combiogpsusersSearch by gene symbol at Google.pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigGoogle search (gene symbol)000None8.0Taqman gene expression assays from Applied Biosystems formerly ABIreagentshttps://www.lifetechnologies.com/order/genome-database/browse/gene-expression/gene-id/{{EntrezGene}}?referrer=BioGPS2013-12-18 02:11:418.082008-05-16 23:21:0153www.lifetechnologies.combiogpsusersTaqman gene expression assays from Life Technologiespluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigLife Technologies Taqman Gene Expression000None8.0The Inparanoid program was developed at the Center for Genomics and Bioinformatics to address the need to identify orthologs. Homologs that originate from a speciation event are called orthologs and homologs that originate from a gene duplication event are called paralogs. If a duplication event predates the speciation event the parlogs are called outparalogs, and they can be present in different species. If instead an ortholog undegoes one or several duplication events, the resulting paralogs are called inparalogs, and they are co-orthologs to one or more orthologs in another species. Since an outparalog pair ought to have a more diversified function than inparalogs, it is useful to distinguish between the two. Furthermore, clustering inparalogs together allows proper identification of both one-to-one and many-to-many orthology cases. More in-depth information on this subject, the Inparanoid program and its applications has been previously published ( 1 ). The InParanoid program is available upon request to inparanoid@sbc.su.se homologinparanoidparaloghttp://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id={{EnsemblGene}}&idtype=all&all_or_selection=all&specieslist=10&scorelimit=0.05&.submit=Submit+Query&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection2009-05-05 01:07:438.072009-05-05 01:07:43438inparanoid.sbc.su.sebiogpsusersThe Inparanoid program was developed at the Center for Genomics and Bioinformatics to address the need to identify orthologs. Homologs...plugincdoherty/profile/784/cdohertyColleen Dohertypubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigInParanoid Search000None2009-12-08 17:02:05http://genechaser.stanford.edu/imgCreaterTable.php?geneId={{EntrezGene}}&qValue=0.01&isHomology=on&fold=2&rank=0&display=&orderBy=Fold&limitRec=20&cPage=1&titleIn=&typeSource=All2009-12-08 17:02:137.077.0592genechaser.stanford.edubiogpsusersNo summary provided.pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigGeneChaser000None7.0Key Products & Services, Biotechnology Division: * Proteins * Antibodies * ELISA/Assay Kits * ELISpot Kits * Multiplex Assays/Arrays * Flow Cytometry Kits * mRNA Quantitation Kits * Cell Selection Kits * Cell Culture & Stem Cell Reagents * Primer Pairs * Supplemental Research Reagents * Assay Services (Analytical Testing Service and Custom Assay Development)reagentshttp://www.rndsystems.com/product_results.aspx?r=0&c=0&s=0&a=0&m=0&k={{Symbol}}&o=AND&b=False&referrer=BioGPS2009-08-03 17:02:017.062008-09-11 22:33:12138www.rndsystems.combiogpsusersKey Products & Services, Biotechnology Division: * Proteins * Antibodies * ELISA/Assay Kits * ELISpot Kits *...pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigR&D Systems000None7.0US Patent and Trademark Officeliteraturepatentusptohttp://patft.uspto.gov/netacgi/nph-Parser?Sect1=PTO2&Sect2=HITOFF&p=1&u=%2Fnetahtml%2FPTO%2Fsearch-bool.html&r=0&f=S&l=50&TERM1={{Symbol}}&FIELD1=&co1=AND&TERM2=&FIELD2=&d=PTXT2009-02-05 22:39:317.062009-02-05 22:39:31330patft.uspto.govbiogpsusersUS Patent and Trademark Officepluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigUS Patent Full Text Database 000None2014-04-08 02:40:53http://japantobacco.nextbio.com/c/home/home.nb?q={{Symbol}}2014-04-08 02:40:537.077.01151japantobacco.nextbio.combiogpsusersNo summary provided.pluginnaotofuruhata/profile/7715/naotofuruhatanaotofuruhatapubliciframehumanmouseratJT_NextBio000None7.0N-Browse is an interactive graphical browser for biological networks. The goal of N-Browse is to provide a simple, intuitive, and dynamic interface to molecular interaction data that allows biologists to take advantage of the rapidly expanding body of functional genomics data.interactionnetworkhttp://nematoda.bio.nyu.edu:8080/NBrowse/showNBrowser.jsp?species=2&root={{Symbol}}&unew=T2009-05-08 14:23:547.072009-05-08 14:23:54444nematoda.bio.nyu.edu:8080biogpsusersN-Browse is an interactive graphical browser for biological networks. The goal of N-Browse is to provide a simple, intuitive, and dynamic...pluginivaagenes/profile/877/ivaagenesIan Vaagenespubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigN-Browse