000mouseTrue4.0EMAGE is a database of in situ gene expression data in the mouse embryo. Spatial gene expression patterns are mapped into a 3D atlas. Anatomical text terms are mapped to an ontology of mouse anatomy. http://www.emouseatlas.org/emage3danatomical-ontologyatlascoexpressiondatabaseexpressiongene-expressionmouseontologyhttp://www.emouseatlas.org/emagewebapp/pages/emage_general_query_result.jsf?genes={{MGI}}2013-03-05 22:22:044.032010-04-05 17:41:21673www.emouseatlas.orgbiogpsusersEMAGE is a database of in situ gene expression data in the mouse embryo.pluginpeter_c_stevenson/profile/5677/peter_c_stevensonPeter StevensonpubliciframemouseEMAGE000mouse4.0From E.L. Huttlin et al Cell, Volume 143, Issue 7, 1174-1189, 23 December 2010 Here we report the most thorough characterization of tissue specific protein abundance and phosphorylation to date, including 12,000 proteins and 36,000 phosphorylation sites from nine mouse tissues. These data revealed distinctive and complementary protein and phosphoprotein expression profiles that support each tissue’s unique physiology. Moreover, by combining protein abundance measurements with phosphorylation observations, we could distinguish tissue-specific phosphorylation of ubiquitous proteins from phosphorylation of tissue-specific proteins. Furthermore, most phosphoproteins integrate input from multiple kinases spanning diverse signaling pathways. Overall, the ‘‘typical’’ phosphoprotein is broadly expressed yet is variably phosphorylated to tune protein function to the needs of each tissue. We now present these protein abundance and phosphorylation data as a web-based resource (http://gygi. med.harvard.edu/phosphomouse/index.php) to aid analysis of existing biological data and inspire future biological investigations.phosphorylationtissuehttps://gygi.med.harvard.edu/phosphomouse/search_results.php?search_phrase={{Symbol}}2011-05-03 22:50:504.042010-12-23 19:36:18851gygi.med.harvard.edubiogpsusersFrom E.L. Huttlin et al Cell, Volume 143, Issue 7, 1174-1189, 23 December 2010 Here we report the most thorough characterization of...pluginnsalathi/profile/80/nsalathiNeeraj Salathiapubliciframemousemouse tissue phosphorylation database000None3.0Antibodies from GeneTexreagentshttp://www.genetex.com/commerce/catalog/srhkeyword.cz?keyword={{Symbol}}2008-08-01 19:36:463.032008-05-16 23:22:0354www.genetex.combiogpsusersAntibodies from GeneTexpluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigGeneTex antibodies000mouse2010-04-05 18:12:34http://www.informatics.jax.org/searches/expression_report.cgi?op%3AmarkerSymname=contains&markerSymname={{Symbol}}&symnameBreadth=CS&op%3Acoords=between&sort=Gene+symbol2011-05-03 22:46:593.033.0674www.informatics.jax.orgbiogpsusersNo summary provided.pluginasu/profile/3/asuAndrew SupubliciframemouseGene Expression Database (GXD)000NoneDeveloped in collaboration between the SIB Swiss Institute of Bioinformatics and Geneva Bioinformatics (GeneBio) SA, neXtProt will be a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.2011-07-22 23:50:56http://www.nextprot.org/db/entry/NX_{{Uniprot}}2011-07-22 23:50:563.033.0946www.nextprot.orgbiogpsusersExploring the universe of human proteinspluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigneXtProt000None2012-05-03 21:19:45http://www.ncbi.nlm.nih.gov/gene/{{EntrezGene}}2012-05-03 21:20:573.013.0984www.ncbi.nlm.nih.govbiogpsusersNo summary provided.pluginxachenxi/profile/2005/xachenxiLiping Chenpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpiggene000None3.0InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation. Our curation team systematically reviews and curates experimentally-validated human and mouse interactions from the biomedical literature. Bovine interactions are largely predicted via orthology with these interaction participants. Human and mouse interactions are curated with rich contextual annotations including information on the participant molecules, the reference publication, the interaction detection method, the cell and tissue types in which the interaction was described and a variety of other information in compliance with the recently proposed minimum information for molecular interactions (MIMIx) standard (Nat. Biotech., 2007). We have developed the InnateDB submission system to allow curators to submit data using a structured controlled vocabulary for the annotation of protein-protein interaction experiments (Developed by the HUPO Proteomics Standards Initiative). For further details on InnateDB curation please refer to our paper describing InnateDB curation of the innate immunity interactome which has been published in BMC Systems Biology.innate-immunityhttp://www.innatedb.com/getGeneCard.do?id={{EnsemblGene}}2013-04-09 08:40:573.022013-04-09 08:40:561104www.innatedb.combiogpsusersfacilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune responsepluginasu/profile/3/asuAndrew SupubliciframehumanmouseInnateDB000None 2011-02-10 18:18:32https://pubmed.ncbi.nlm.nih.gov/?term={{Symbol}}+%28cancer+OR+tumor+OR+tumours%29&sort=pubdate&size=2002021-06-19 23:04:223.033.0883pubmed.ncbi.nlm.nih.govbiogpsusersNo summary provided.pluginvictor_trevino/profile/2323/victor_trevinoVictor Trevinopubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigNCBI PubMed and Cancer1015None3.0 heartliteraturetext-mininghttps://pubmed.ncbi.nlm.nih.gov/?term=%28{{Symbol}}%29+AND+%28heart+OR+cardiac%292025-03-31 15:02:473.032012-05-16 21:57:27989pubmed.ncbi.nlm.nih.govbiogpsusersSearch by Gene name for Cardiac-related resultspluginchrau/profile/5666/chrauchraupubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigCardiac Pubmed Search000humanmouseratfruitflynematodezebrafish3.0The NIF system aggregates a vast amount of information relevant to neuroscience.brainneuronneurosciencenifucsdhttp://www.neuinfo.org/nif/nifgwt.html?query={{Symbol}}2011-05-03 22:48:553.032010-08-25 15:07:48790www.neuinfo.orgbiogpsusersThe NIF system aggregates a vast amount of information relevant to neuroscience.pluginbgood/profile/2918/bgoodBenjamin GoodpubliciframehumanmouseratfruitflynematodezebrafishNIF (Neuroscience Information Framework)