000None9.0QuickGO is a fast web-based browser for Gene Ontology terms and annotations, which is provided by the GOA group at the EBI. geneontologyhttp://www.ebi.ac.uk/QuickGO/GSearch?q={{Unigene}}2010-04-08 20:54:049.092010-04-08 20:54:04676www.ebi.ac.ukbiogpsusersQuickGO is a fast web-based browser for Gene Ontology terms and annotations, which is provided by the GOA group at the EBI. plugintsaunders/profile/3065/tsaundersThom Saunderspubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigQuickGo000humanmouseFuncBase is a public database of predicted gene-function annotations for Yeast, Mouse and Human genes, overlayed upon the experimentally verified annotations as taken from the SGD, MGI and Ensembl Gene databases, respectively. FuncBase displays three aspects of gene function predictions: - First, for a particular gene, users can view all functions ranked by certainty that the corresponding gene-function pair is a true annotation. - Second, for a particular function, users can view all genes ranked by certainty. - The third aspect is functional linkage predictions, displayed alongside the first two aspects as gene-centered and function-centered images, respectively, and editable via Cytoscape. These functional linkage graphs are independently informative, though they are also used as a step in one of the gene function prediction techniques whose certainty scores are displaying on this site, so they can be treated as evidence.2010-06-02 12:28:13http://func.med.harvard.edu/human/genes/list_functional_scores/ENTREZ_GENE:{{EntrezGene}}2011-05-03 22:46:529.079.0711func.med.harvard.edubiogpsusersFuncBase is a public database of predicted gene-function annotations for Yeast, Mouse and Human genes, overlayed upon the experimentally...pluginhjmollenkopf/profile/3325/hjmollenkopfHans-Joachim MollenkopfpubliciframehumanmouseFuncBase000NoneSearch for a variety of related products, including: Biomolecule cDNA Antibodies RNAi siRNA Inhibitor shRNA Chemicals RNA miRNA Tissues, Lysates & Extracts Oligo/Primer Assay Kit Cells & Strains DNA Vector miRNA 3´ UTR Targets (Human) miRNA 3´ UTR Targets (Mouse) miRNA 3´ UTR Targets (Rat) Other Kinase Inhibitors 2009-03-17 18:42:31http://www.biocompare.com/Search.aspx?st=r&sg=0&c=0&so=a&s={{Symbol}}2012-08-01 22:32:589.089.0387www.biocompare.combiogpsusersNo summary provided.pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigBiocompare000humanmouse9.0SNPedia is a wiki investigating human genetics that shares information about the effects of variations in DNA, citing peer-reviewed scientific publications.mutationsnpvariationwikihttp://www.snpedia.com/index.php/Special:SearchByProperty?title=Special%3ASearchByProperty&property=In+gene&value={{Symbol}}2011-05-03 22:49:279.082010-09-22 00:11:16813www.snpedia.combiogpsusersSNPedia is a wiki investigating human genetics that shares information about the effects of variations in DNA, citing peer-reviewed...pluginsbatalov/profile/89/sbatalovSerge BatalovpubliciframehumanmouseSNPedia000None8.0TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families. TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast (S. cerevisiae and S. pombe) and plant (A. thaliana) to reveal these distant members. TreeFam is also an ortholog database. Unlike other pairwise alignment based ones, TreeFam infers orthologs by means of gene trees. It fits a gene tree into the universal species tree and finds historical duplications, speciations and losses events. TreeFam uses this information to evaluate tree building, guide manual curation, and infer complex ortholog and paralog relations. The basic elements of TreeFam are gene families that can be divided into two parts: TreeFam-A and TreeFam-B families. TreeFam-B families are automatically created. They might contain errors given complex phylogenies. TreeFam-A families are manually curated from TreeFam-B ones. Family names and node names are assigned at the same time. The ultimate goal of TreeFam is to present a curated resource for all the families.familiesorthologparalogphylogenetictreehttp://www.treefam.org/cgi-bin/TFseq.pl?id={{EnsemblGene}}2009-05-06 21:49:098.062009-05-06 21:49:09442www.treefam.orgbiogpsusersTreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives...pluginivaagenes/profile/877/ivaagenesIan Vaagenespubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigTreefam000True2009-09-03 21:54:06http://kb.psi-structuralgenomics.org/KB/search.do?SSIDSearch=KeywordSearch&query={{Symbol}}2010-06-09 16:56:428.078.0512kb.psi-structuralgenomics.orgbiogpsusersNo summary provided.pluginkiraanthony/profile/1373/kiraanthonyKira Anthonypubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigPSI Structural Genomics Knowledgebase000None8.0Search by gene symbol at Google.genegoogleliteraturesearchsymbolhttp://www.google.com/custom?q={{symbol}}2013-06-27 17:33:138.072008-06-04 18:41:1568www.google.combiogpsusersSearch by gene symbol at Google.pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigGoogle search (gene symbol)000None8.0Taqman gene expression assays from Applied Biosystems formerly ABIreagentshttps://www.lifetechnologies.com/order/genome-database/browse/gene-expression/gene-id/{{EntrezGene}}?referrer=BioGPS2013-12-18 02:11:418.082008-05-16 23:21:0153www.lifetechnologies.combiogpsusersTaqman gene expression assays from Life Technologiespluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigLife Technologies Taqman Gene Expression000mouse8.0The Allen Mouse Spinal Cord Atlas is an interactive database of gene expression mapped across all anatomic segments of the cord for juveniles and adults. The indexed set of images is based on RNA in situ hybridization data, and is searchable and sortable by gene, age, expression, and in the case of the adult, by the cervical, thoracic, lumbar, sacral, and coccygeal segments. This resource represents an unprecedented platform for exploring the spinal cord at the cellular and molecular levels.cordexpressionmousespinalhttp://mousespinal.brain-map.org/imageseries/list/1.html?entrez_term={{EntrezGene}}2011-05-03 22:47:578.062009-02-06 01:18:00332mousespinal.brain-map.orgbiogpsusersThe Allen Mouse Spinal Cord Atlas is an interactive database of gene expression mapped across all anatomic segments of the cord for...pluginasu/profile/3/asuAndrew SupubliciframemouseMouse Spinal Cord Atlas000None8.0The Inparanoid program was developed at the Center for Genomics and Bioinformatics to address the need to identify orthologs. Homologs that originate from a speciation event are called orthologs and homologs that originate from a gene duplication event are called paralogs. If a duplication event predates the speciation event the parlogs are called outparalogs, and they can be present in different species. If instead an ortholog undegoes one or several duplication events, the resulting paralogs are called inparalogs, and they are co-orthologs to one or more orthologs in another species. Since an outparalog pair ought to have a more diversified function than inparalogs, it is useful to distinguish between the two. Furthermore, clustering inparalogs together allows proper identification of both one-to-one and many-to-many orthology cases. More in-depth information on this subject, the Inparanoid program and its applications has been previously published ( 1 ). The InParanoid program is available upon request to inparanoid@sbc.su.se homologinparanoidparaloghttp://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id={{EnsemblGene}}&idtype=all&all_or_selection=all&specieslist=10&scorelimit=0.05&.submit=Submit+Query&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection2009-05-05 01:07:438.072009-05-05 01:07:43438inparanoid.sbc.su.sebiogpsusersThe Inparanoid program was developed at the Center for Genomics and Bioinformatics to address the need to identify orthologs. Homologs...plugincdoherty/profile/784/cdohertyColleen Dohertypubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigInParanoid Search