000human28.0This is an example plugin that uses the bio2rdf SPARQL interface http://atlas.bio2rdf.org/sparql . It requests OMIM disorders that where the gene in question is mentioned in the text describing pathogenesis. The query that makes this work (and is embedded in the URL) is: PREFIX omim: <http://bio2rdf.org/ns/omim#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> select distinct ?OMIM_disorder where { ?s omim:PATHOGENESIS ?o . ?o bif:contains "VEGF" . ?s rdf:type omim:GeneticDisorder . ?s rdfs:label ?OMIM_disorder }bio2rdfomimpathogenesisrdfsparqlhttp://atlas.bio2rdf.org/sparql?default-graph-uri=&query=PREFIX+omim%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fomim%23%3E%0D%0APREFIX+rdfs%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0D%0Aselect+distinct+%3FOMIM_disorder+where+%7B%0D%0A%3Fs+omim%3APATHOGENESIS+%3Fo+.%0D%0A%3Fo+bif%3Acontains+%22{{Symbol}}%22+.+%0D%0A%3Fs+rdf%3Atype+omim%3AGeneticDisorder+.%0D%0A%3Fs+rdfs%3Alabel+%3FOMIM_disorder%0D%0A%7D&format=text%2Fhtml2011-05-03 22:48:5928.0232010-03-07 01:07:42632atlas.bio2rdf.orgbiogpsusersThis is an example plugin that uses the bio2rdf SPARQL interface http://atlas.bio2rdf.org/sparql . It requests OMIM disorders that where...pluginbgood/profile/2918/bgoodBenjamin GoodpubliciframehumanOMIM disorders where gene is linked to pathogenesis000None28.0Reagents from Sigma-Aldrich (antibodies, RNAi, small molecule inhibitors)reagentshttp://www.sigmaaldrich.com/catalog/Lookup.do?N5=Gene%20Symbol&N4={{Symbol}}&D10={{Symbol}}&N3=mode+matchall&D7=0&N25=0&N1=S_ID&ST=RS&F=PR&referrer=BioGPS2009-11-11 17:23:1128.0222008-05-16 23:18:0451www.sigmaaldrich.combiogpsusersReagents from Sigma-Aldrich (antibodies, RNAi, small molecule inhibitors)pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigSigma-Aldrich reagents000humanmouserat28.0Pubmed links for NCBI's GeneRIF database containing user-contributed references. For more info, see http://www.ncbi.nlm.nih.gov/projects/GeneRIF/GeneRIFhelp.html.literaturehttp://www.ncbi.nlm.nih.gov/sites/entrez?Cmd=Link&LinkName=gene_pubmed_rif&IdsFromResult={{EntrezGene}}2011-05-03 22:48:0428.0202008-04-30 16:03:3133www.ncbi.nlm.nih.govbiogpsusersPubmed links for NCBI's GeneRIF database containing user-contributed references. For more info, see...pluginasu/profile/3/asuAndrew SupubliciframehumanmouseratNCBI GeneRIF -- Reference Into Function000human2009-04-01 14:40:30http://genome.ucsc.edu/cgi-bin/hgNear?hgsid=&org=Human&db=hg18&near_search=dkk1&submit=Go!&near_order=expGnfAtlas2&near.count=50{{Unigene}}2011-05-03 22:50:1327.02627.0404genome.ucsc.edubiogpsusersNo summary provided.plugincandersen/profile/597/candersenClaus AndersenpubliciframehumanUniGene_GEOprofile000True27.0Search for Antibodies and Reagents from Cell Signaling Technology, Inc.antibodycellpathwayproteinreagentssignalinghttp://www.cellsignal.com/browse/?Ntt={{symbol}}2016-06-14 20:36:3027.0252008-05-16 23:20:0352www.cellsignal.combiogpsusersSearch for Antibodies and Reagents from Cell Signaling Technology, Inc.pluginmsullivan/profile/2894/msullivanMichael Sullivanpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigCell Signaling Techology000None2009-08-12 01:41:36http://david.abcc.ncifcrf.gov/api.jsp?type=ENTREZ_GENE_ID&ids={{EntrezGene}}&tool=geneReportFull&referrer=BioGPS2009-08-12 01:41:3626.02326.0499david.abcc.ncifcrf.govbiogpsusersNo summary provided.pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigDAVID Gene Report000humanRTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I, Taqman, Hybridisation Probes, Molecular Beacon) to prevent time-consuming primer design and experimental optimisation, and to introduce a certain level of uniformity and standardisation among different laboratories.2009-05-03 12:51:19http://www.rtprimerdb.org/search.php?id=&gene={{Symbol}}&search=Search2011-05-03 22:49:1525.01525.0433www.rtprimerdb.orgbiogpsusersRTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I,...pluginivaagenes/profile/877/ivaagenesIan VaagenespubliciframehumanRTPrimerDB000NoneThe Protein Information Resource (PIR), located at Georgetown University Medical Center (GUMC), is an integrated public bioinformatics resource to support genomic and proteomic research, and scientific studies.2008-06-04 19:34:51http://pir.georgetown.edu/cgi-bin/textsearch.pl?field0=ENTREZGENEID&search=1&query0={{EntrezGene}}2009-03-19 16:34:3624.02124.070pir.georgetown.edubiogpsusersThe Protein Information Resource (PIR), located at Georgetown University Medical Center (GUMC), is an integrated public bioinformatics...pluginasu/profile/3/asuAndrew Supubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigProtein Information Resource (PIR)000None24.0GoPubMed is a web service for summarization and exploration of large citation collections that result from a user's PubMed query.annotationbrowsingliteraturemeshontologypubmedsemanticsstatisticstext-mininghttp://www.gopubmed.com/search?q={{Symbol}}&t=biogps&noCursor=yes2010-05-21 11:37:4524.0172009-03-17 18:28:27385www.gopubmed.combiogpsusersGoPubMed is a web service for summarization and exploration of large citation collections that result from a user's PubMed query.plugingopubmed/profile/3262/gopubmedgopubmed gopubmedpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigGoPubMed000None24.0The Alternative Splicing and Transcript Diversity (ASTD) database project is creating a database of alternative splice events and transcripts of genes from human, mouse and rat. Full length transcripts are generated with the aim of understanding the mechanism of alternative splicing on a genome-wide scale.exonexpressiongeneticssplicinghttp://www.ebi.ac.uk/astd/geneview.html?acc={{EnsemblGene}}2008-11-26 15:29:0424.0182008-11-26 15:05:25228www.ebi.ac.ukbiogpsusersThe Alternative Splicing and Transcript Diversity (ASTD) database project is creating a database of alternative splice events and...pluginkrzysztof/profile/123/krzysztofChris Wypijewskipubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigAlternative Splicing and Transcript Diversity 1.1