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<biogps><data><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options"><item key="allowedSpecies"><item>human</item></item></item><item key="description"/><item key="created">2010-10-30 00:46:12</item><item key="url">http://browser.1000genomes.org/Homo_sapiens/Gene/Summary?db=core;g={{EnsemblGene}}</item><item key="lastmodified">2011-05-03 22:46:25</item><item key="usage_data"><item key="layouts">8.0</item><item key="users">7</item></item><item key="popularity">8.0</item><item key="id">836</item><item key="shortUrl">browser.1000genomes.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">No summary provided.</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">1000 Genomes Browser</item></item><item><item key="rating_data"><item key="avg_stars">10</item><item key="total">1</item><item key="avg">5</item></item><item key="options"><item key="certified_owner">True</item></item><item key="popularity">8.0</item><item key="description">Disease and Gene Annotations (DGA) is collaborative effort, aiming to provide a comprehensive and integrated annotation to human genome by using computable, controlled vocabulary of Disease Ontology (DO), NCBI Gene Reference Into Function (GeneRIF), and molecular interaction networks.
The Disease Ontology was initially developed as part of the NUgene project starting in 2003 at Northwestern.

Built on the Gene Ontology (GO) Consortium and Open Biological and Biomedical Ontologies (OBO) Foundry, DO delineates a semantically computable structure of inherited, environmental and infectious human disease that is based on a manually inspected subset of the Unified Medical Language System (UMLS) and other terms outside UMLS. The DO is organized as a directed acyclic graph (DAG). Every DO term is unique and contains textual description and external references to well-established, well-adopted terminologies that contain disease and disease related concepts such as UMLS, Medical Subject Headings (MeSH), SNOMED, OMIM and International Classification of Diseases (ICD)-9 and ICD-10.
GeneRIF offers functional description to genes with high quality and frequency of update. GeneRIF is brief textual description (up to 250 characters) to gene provided by NCBI database. Every GeneRIF entry is associated a certain PubMed ID, showing biological evidences related to the description. NCBI also provides an open access to GeneRIF so that the community can contribute to GeneRIF production, which enables low mapping error of gene and high-frequent update.
With intelligent electric annotation program, DGA brings them together to build a comprehensive set of disease-to-gene relationships with high disease &#8211;gene coverage and keeps the resulting knowledge current responding to update of DO and GeneRIF.

Further, DGA integrates various types of molecular interaction networks so that users can investigate the relationships between disease-related genes and infer associations between diseases.</item><item key="tags"><item>annotation</item><item>disease</item><item>of</item></item><item key="url">http://dga.nubic.northwestern.edu/pages/result.php?st=g2d&amp;qn={{Symbol}}</item><item key="lastmodified">2012-12-08 04:12:03</item><item key="usage_data"><item key="layouts">8.0</item><item key="users">6</item></item><item key="created">2012-12-06 23:44:33</item><item key="id">1063</item><item key="shortUrl">dga.nubic.northwestern.edu</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Disease and Gene Annotations (DGA) is collaborative effort that provides an integrated disease annotation for the human genome</item><item key="in">plugin</item><item key="owner"><item key="username">wakibbe</item><item key="url">/profile/6276/wakibbe</item><item key="name">Warren Kibbe</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">Disease and Gene Annotations (DGA)</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">8.0</item><item key="description">Taqman gene expression assays from Applied Biosystems

formerly ABI</item><item key="tags"><item>reagents</item></item><item key="url">https://www.lifetechnologies.com/order/genome-database/browse/gene-expression/gene-id/{{EntrezGene}}?referrer=BioGPS</item><item key="lastmodified">2013-12-18 02:11:41</item><item key="usage_data"><item key="layouts">8.0</item><item key="users">8</item></item><item key="created">2008-05-16 23:21:01</item><item key="id">53</item><item key="shortUrl">www.lifetechnologies.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Taqman gene expression assays from Life Technologies</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">Life Technologies Taqman Gene Expression</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options"><item key="allowedSpecies"><item>human</item></item></item><item key="popularity">8.0</item><item key="description">Plasmid Information Database (PlasmID) is a central repository for plasmid clone collections and distribution as part of the DF/HCC DNA Resource Core based at the Harvard Institute of Proteomics (HIP). We are also the Protein Structure Initiative (PSI) Material Repository.  </item><item key="tags"><item>genetics</item><item>plasmid</item></item><item key="url">http://plasmid.med.harvard.edu/PLASMID/RefseqSearchContinue.do?cdna=true&amp;shrna=true&amp;genomicfragment=true&amp;tfbindsite=true&amp;genome=true&amp;pagesize=50&amp;species=Homo%20sapiens&amp;refseqType=cDNA&amp;searchType=Gene%20ID&amp;searchString={{EntrezGene}}</item><item key="lastmodified">2011-05-03 22:49:09</item><item key="usage_data"><item key="layouts">8.0</item><item key="users">8</item></item><item key="created">2008-12-22 17:33:26</item><item key="id">262</item><item key="shortUrl">plasmid.med.harvard.edu</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Plasmid Information Database (PlasmID) is a central repository for plasmid clone collections and distribution as part of the DF/HCC DNA...</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">PlasmID</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">8.0</item><item key="description">The Inparanoid program was developed at the Center for Genomics and Bioinformatics to address the need to identify orthologs. 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    * ELISA/Assay Kits
    * ELISpot Kits
    * Multiplex Assays/Arrays
    * Flow Cytometry Kits
    * mRNA Quantitation Kits
    * Cell Selection Kits
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    * Assay Services (Analytical Testing Service and Custom Assay Development)</item><item key="tags"><item>reagents</item></item><item key="url">http://www.rndsystems.com/product_results.aspx?r=0&amp;c=0&amp;s=0&amp;a=0&amp;m=0&amp;k={{Symbol}}&amp;o=AND&amp;b=False&amp;referrer=BioGPS</item><item key="lastmodified">2009-08-03 17:02:01</item><item key="usage_data"><item key="layouts">7.0</item><item key="users">6</item></item><item key="created">2008-09-11 22:33:12</item><item key="id">138</item><item key="shortUrl">www.rndsystems.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Key Products &amp; Services, Biotechnology Division:      * Proteins     * Antibodies     * ELISA/Assay Kits     * ELISpot Kits     *...</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">R&amp;D Systems</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">7.0</item><item key="description">US Patent and Trademark Office</item><item key="tags"><item>literature</item><item>patent</item><item>uspto</item></item><item key="url">http://patft.uspto.gov/netacgi/nph-Parser?Sect1=PTO2&amp;Sect2=HITOFF&amp;p=1&amp;u=%2Fnetahtml%2FPTO%2Fsearch-bool.html&amp;r=0&amp;f=S&amp;l=50&amp;TERM1={{Symbol}}&amp;FIELD1=&amp;co1=AND&amp;TERM2=&amp;FIELD2=&amp;d=PTXT</item><item key="lastmodified">2009-02-05 22:39:31</item><item key="usage_data"><item key="layouts">7.0</item><item key="users">6</item></item><item key="created">2009-02-05 22:39:31</item><item key="id">330</item><item key="shortUrl">patft.uspto.gov</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">US Patent and Trademark Office</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">US Patent Full Text Database </item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">7.0</item><item key="description"/><item key="tags"><item>cancer</item></item><item key="url">http://cbio.mskcc.org/tcga-generanker/humanGeneDetails.jsp?entrez_gene_id={{EntrezGene}}</item><item key="lastmodified">2011-06-16 18:49:19</item><item key="usage_data"><item key="layouts">7.0</item><item key="users">6</item></item><item key="created">2011-06-16 03:56:28</item><item key="id">943</item><item key="shortUrl">cbio.mskcc.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Gene Ranker from MSKCC ranks genes for an association with cancer using 39 gene lists</item><item key="in">plugin</item><item key="owner"><item key="username">tharding</item><item key="url">/profile/4676/tharding</item><item key="name">tharding</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">Gene Ranker: TCGA GBM 6000</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description"/><item key="created">2014-04-08 02:40:53</item><item key="url">http://japantobacco.nextbio.com/c/home/home.nb?q={{Symbol}}</item><item key="lastmodified">2014-04-08 02:40:53</item><item key="usage_data"><item key="layouts">7.0</item><item key="users">7</item></item><item key="popularity">7.0</item><item key="id">1151</item><item key="shortUrl">japantobacco.nextbio.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">No summary provided.</item><item key="in">plugin</item><item key="owner"><item key="username">naotofuruhata</item><item key="url">/profile/7715/naotofuruhata</item><item key="name">naotofuruhata</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item></item><item key="name">JT_NextBio</item></item></data></biogps>
