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formerly ABI</item><item key="tags"><item>reagents</item></item><item key="url">https://www.lifetechnologies.com/order/genome-database/browse/sirna/gene-id/{{EntrezGene}}?referrer=BioGPS</item><item key="lastmodified">2013-12-18 02:10:27</item><item key="usage_data"><item key="layouts">11.0</item><item key="users">11</item></item><item key="created">2008-05-22 21:02:59</item><item key="id">62</item><item key="shortUrl">www.lifetechnologies.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">GeneAssist(TM) siRNA Workflow Builder</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">Life Technologies siRNAs</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description"> </item><item key="created">2021-06-19 22:59:27</item><item key="url">https://www.wikigenes.org/e/gene/e/{{EntrezGene}}.html</item><item key="lastmodified">2021-06-19 22:59:27</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="popularity">0</item><item key="id">1282</item><item key="shortUrl">www.wikigenes.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description"/><item key="in">plugin</item><item key="owner"><item key="username">victor_trevino</item><item key="url">/profile/2323/victor_trevino</item><item key="name">Victor Trevino</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">WikiGenes</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0</item><item key="description"> IntegrateRNA's experts have examined thousands of different RNA data sets, which gives us a unique insight into RNA research. To support your research, we use next-generation sequencing technology and bioinformatics analysis to provide you with one-stop lncRNA-seq service from RNA preparation to final comprehensive bioinformatics data analysis, rapidly advancing the results required for biological and biomedical research.

</item><item key="tags"><item>lncrna</item><item>sequencing</item></item><item key="url">https://integraterna.creative-biogene.com/service/lncrna-sequencing-service.html</item><item key="lastmodified">2024-08-29 07:59:27</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="created">2024-08-29 07:59:27</item><item key="id">1410</item><item key="shortUrl">integraterna.creative-biogene.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">LncRNA Sequencing</item><item key="in">plugin</item><item key="owner"><item key="username">creativebiogene</item><item key="url">/profile/20554/creativebiogene</item><item key="name">Wendy Wilson</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">LncRNA Sequencing</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options"><item key="certified_owner">True</item></item><item key="popularity">68.0</item><item key="description">Type any instructive description for users here.</item><item key="tags"><item>description</item><item>summary</item></item><item key="url">/ext/description/?geneid={{EntrezGene}}</item><item key="lastmodified">2010-06-09 16:56:43</item><item key="usage_data"><item key="layouts">68.0</item><item key="users">44</item></item><item key="created">2008-03-12 16:59:03</item><item key="id">6</item><item key="shortUrl">biogps.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Type any instructive description for users here.</item><item key="in">plugin</item><item key="owner"><item key="username">cwu</item><item key="url">/profile/2/cwu</item><item key="name">Chunlei Wu</item></item><item key="permission_style">public</item><item key="type">div</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">Gene Description</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description">Neuronal development requires a complex choreography of transcriptional decisions to obtain a specific cellular identity. Yet the poor accessibility of individual neuronal classes has made direct measurements of gene expression difficult. We have combined nuclear-antigen targeting FACS sorting with high-resolution massively parallel RNA sequencing to provide the first resource of deep-transcriptomic data in individual sorted neuron populations. We provide here, an interactive space to explore the numerous aspects of these data including spatial and temporal usage of alternative mRNA isoforms and promoters, to a host of mRNA and long noncoding RNA (lncRNA) genes newly implicated in neuronal cell fate specification. This database enables integrated, multidimensional data mining and provides a powerful resource to generate insights into the transcriptional regulation underlying neuronal diversity in the developing cortex.

DeCoN provides an exploratory interface to deep transcriptional profiling data of three clinically relevant subclasses of mouse cortical projection neurons:

    Callosal (CPN)
    Subcerebral (ScPN)
    Corticothalamic/Subplate neurons (CthPN)

We have conducted isoform-deconvolution based differential RNA-Sequencing on sorted populations of each neuronal subclass at specified timepoints during corticogenesis:

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</item><item key="created">2016-11-28 13:59:45</item><item key="url">{{entrezgene}}</item><item key="lastmodified">2016-11-28 13:59:46</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="popularity">0</item><item key="id">1240</item><item key="shortUrl">{{entrezgene}}</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">folate DEGs</item><item key="in">plugin</item><item key="owner"><item key="username">Budding</item><item key="url">/profile/10273/Budding</item><item key="name">Yolanda Lai</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>zebrafish</item></item><item key="name">14hr</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description"> </item><item key="created">2018-05-22 02:52:59</item><item key="url">https://integrity.thomson-pharma.com/integrity/xmlxsl/pk_self_reg.show_initial_page</item><item key="lastmodified">2018-05-22 02:52:59</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="popularity">0</item><item key="id">1264</item><item key="shortUrl">integrity.thomson-pharma.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description"/><item key="in">plugin</item><item key="owner"><item key="username">Shiraki</item><item key="url">/profile/11131/Shiraki</item><item key="name">Shiraki</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">Integrity</item></item><item><item key="rating_data"><item key="avg_stars">10</item><item key="total">1</item><item key="avg">5</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description">PanDrugs is a feasible method to identify potentially druggable molecular alterations and prioritize drugs to facilitate the interpretation of genomic landscape and clinical decision-making in cancer patients. The approach expands the search of druggable genomic alterations from the concept of cancer driver genes to the druggable pathway context extending anticancer therapeutic options beyond already known cancer genes. The methodology is public and easily integratable with custom pipelines through its programmatic API or its docker image. 

PanDrugs webtool at http://www.pandrugs.org

Article reference: 
Pineiro-Yanez, E. et al. PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data. Genome Med 10, 41 (2018). 

PubMed: 
https://www.ncbi.nlm.nih.gov/pubmed/?term=29848362</item><item key="tags"><item>cancer</item><item>druggable-genome</item><item>drugs</item><item>drug-target</item><item>genomics</item><item>mutation-data</item></item><item key="url">https://www.pandrugs.org/#!/query/?genes={{symbol}}</item><item key="lastmodified">2018-10-24 10:31:39</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="created">2018-10-24 09:59:40</item><item key="id">1276</item><item key="shortUrl">www.pandrugs.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">PanDrugs plugin provides anticancer drug treatments according to individual genomic data (e.g. mutation in your gene of interest).</item><item key="in">plugin</item><item key="owner"><item key="username">gonvader</item><item key="url">/profile/3503/gonvader</item><item key="name">gonvader</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">PanDrugs</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0</item><item key="description"> Creative Bioarray focuses on building efficient detection probes to meet the needs and timelines of clients working in the tumor and genetic disease profiling. We offer a portfolio of CABR detection probes including oncology probes, prenatal FISH probes, microdeletion probes, and hematology probes. These highly sensitive detection products will help you observe the labeled nucleic acid for diagnosis of disease, such as leukemia, lymphoma, solid tumors, autism and other developmental syndrome.</item><item key="tags"><item>cabr</item></item><item key="url">https://www.creative-bioarray.com/products/cabr-detection-probes-list-39.htm</item><item key="lastmodified">2023-07-04 07:24:59</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="created">2023-07-04 07:24:59</item><item key="id">1290</item><item key="shortUrl">www.creative-bioarray.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">cabr</item><item key="in">plugin</item><item key="owner"><item key="username">creativebioarray</item><item key="url">/profile/21217/creativebioarray</item><item key="name">Hannah Cole</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">CABR detection probes </item></item></data></biogps>
