000None2015-06-24 11:17:55{{assembly}}2015-06-24 11:17:550.000.01187{{assembly}}biogpsusersNo summary provided.pluginscm/profile/9200/scmscmpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigwiki000None0.0We introduce Zodiac, a computational tool and resource to integrate existing knowledge about cancer genetic interactions with new information contained in TCGA data. It is an evolution of existing knowledge by treating it as a prior graph, integrating it with a likelihood model derived by Bayesian graphical model based on TCGA data, and producing a posterior graph as updated and data-enhanced knowledge. In short, Zodiac realizes "Prior interaction map + TCGA data → Posterior interaction map." Ref: http://www.ncbi.nlm.nih.gov/pubmed/25956356cancergeneinteractiontcgahttp://compgenome.org/zodiac?Gene_List={{symbol}}2015-09-21 16:13:330.002015-09-21 16:13:331194compgenome.orgbiogpsusersA comprehensive depiction of genetic interactions in cancer by integrating TCGA dataplugincwu/profile/2/cwuChunlei WupubliciframehumannematodeZodiac000None0.0Neuronal development requires a complex choreography of transcriptional decisions to obtain a specific cellular identity. Yet the poor accessibility of individual neuronal classes has made direct measurements of gene expression difficult. We have combined nuclear-antigen targeting FACS sorting with high-resolution massively parallel RNA sequencing to provide the first resource of deep-transcriptomic data in individual sorted neuron populations. We provide here, an interactive space to explore the numerous aspects of these data including spatial and temporal usage of alternative mRNA isoforms and promoters, to a host of mRNA and long noncoding RNA (lncRNA) genes newly implicated in neuronal cell fate specification. This database enables integrated, multidimensional data mining and provides a powerful resource to generate insights into the transcriptional regulation underlying neuronal diversity in the developing cortex. DeCoN provides an exploratory interface to deep transcriptional profiling data of three clinically relevant subclasses of mouse cortical projection neurons: Callosal (CPN) Subcerebral (ScPN) Corticothalamic/Subplate neurons (CthPN) We have conducted isoform-deconvolution based differential RNA-Sequencing on sorted populations of each neuronal subclass at specified timepoints during corticogenesis: E15.5 E16.5 E18.5 P1 expressionneuronhttp://decon.fas.harvard.edu/pyramidal/gene/{{symbol}}2015-11-18 21:59:170.002015-11-18 21:59:161199decon.fas.harvard.edubiogpsusersAn exploratory interface to deep transcriptional profiling data of three clinically relevant subclasses of mouse cortical projection neuronspluginasu/profile/3/asuAndrew SupubliciframemouseThe Developing Cortical Neuron Transcriptome Resource000None 2016-02-22 00:24:54http://chicken.genomics.org.cn/chicken/jsp/search/gene_search.jsp?field={{symbol}}2016-02-22 00:40:490.000.01214chicken.genomics.org.cnbiogpsusers pluginlilitmaria_/profile/9690/lilitmaria_Lilit Antonyanpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigChicken Variation Database 000None 2016-02-21 23:15:13https://scholar.google.ca/scholar?q={{symbol}}2016-02-21 23:15:130001207scholar.google.cabiogpsuserspluginlilitmaria_/profile/9690/lilitmaria_Lilit Antonyanpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigcholar000None0 geneportalhttp://www.humanmine.org/humanmine/portal.do?class=gene&externalid={{entrezgene}}2016-03-29 13:15:24002016-03-29 13:15:241221www.humanmine.orgbiogpsusersHumanMine integrates many types of data for H. sapiens and M. musculus. You can run flexible queries, export results and analyse listspluginyoyehudi/profile/9760/yoyehudiYo YehudipubliciframehumanHumanMine000None0.0 Allows for visualization of genes in their biological context utilizing TCGA datasetsdata-mininggenomicsmutation-datahttp://www.cbioportal.org/cross_cancer.do2016-04-01 19:37:410.002016-03-25 14:16:521219www.cbioportal.orgbiogpsusersVisualization, analysis and download resource for large-scale cancer genomics data setspluginhkinkead/profile/4701/hkinkeadHeather KinkeadpubliciframehumancBioPortal000None0 HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions in different organisms. These have been compiled from different sources and then filtered both systematically and manually to remove erroneous and low-quality interactions. HINT can be used for individual queries as well as for batch downloads. protein-interactionhttp://hint.yulab.org/cgi-bin/query.cgi?Protein={{symbol}}&Organism=Human&Interaction=Binary&Publications=&Evidence=All&Evidence2=All&Evidence3=All2016-05-12 14:43:05002016-05-12 14:43:051226hint.yulab.orgbiogpsusersHINT: A database of high-quality protein-protein interactions in different organisms. Combines data from BioGrid, Intact, Mint and others.plugingtsueng/profile/7731/gtsuenggtsuengpubliciframehumanmouseratfruitflynematodezebrafishthale-cressfrogpigHINT: High-quality Interactomes000NoneThanks to technological advances in genomics, transcriptomics, proteomics, metabolomics, and related fields, projects that generate a large number of measurements of the properties of cells, tissues, model organisms, and patients are becoming commonplace in biomedical research. In addition, curation projects are making great progress mining biomedical literature to extract and aggregate decades worth of research findings into online databases. Such projects are generating a wealth of information that potentially can guide research toward novel biomedical discoveries and advances in healthcare. To facilitate access to and learning from biomedical Big Data, we created the Harmonizome: a collection of information about genes and proteins from 114 datasets provided by 66 online resources. http://amp.pharm.mssm.edu/Harmonizome/2016-07-11 19:56:10http://amp.pharm.mssm.edu/Harmonizome/gene/{{symbol}}2016-07-11 19:56:100001233amp.pharm.mssm.edubiogpsusersa collection of information about genes and proteins from 114 datasets provided by 66 online resourcespluginasu/profile/3/asuAndrew SupubliciframehumanpigHarmonize000nematodeWormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and some related nematodes.2010-02-01 18:49:14http://www.wormbase.org/search/gene/{{WormBase}}2016-09-02 14:41:400.000.0607www.wormbase.orgbiogpsusersWormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with...pluginsibyl/profile/10097/sibylSibyl GaopubliciframenematodeWormBase