<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description">DISEASES is a frequently updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. We further unify the evidence by assigning confidence scores that facilitate comparison of the different types and sources of evidence.

For further details please refer to the following Open Access preprint about the database:

DISEASES: Text mining and data integration of disease-gene associations

http://dx.doi.org/10.1101/008425
http://diseases.jensenlab.org/
</item><item key="created">2014-09-03 20:28:00</item><item key="url">http://diseases.jensenlab.org/Entity?order=textmining,knowledge,experiments&amp;textmining=10&amp;knowledge=10&amp;experiments=10&amp;type1=9606&amp;type2=-26&amp;id1={{ensemblprotein}}</item><item key="lastmodified">2014-09-03 20:28:00</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="popularity">0.0</item><item key="id">1167</item><item key="shortUrl">diseases.jensenlab.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Integrating evidence on disease-gene associations from text mining, manually curated literature, cancer mutation data, and GWAS</item><item key="in">plugin</item><item key="owner"><item key="username">asu</item><item key="url">/profile/3/asu</item><item key="name">Andrew Su</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">DISEASES: Text mining and data integration of disease-gene associations</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description"/><item key="created">2015-06-24 11:10:11</item><item key="url">{{refseqprotein}}</item><item key="lastmodified">2015-06-24 11:10:12</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="popularity">0.0</item><item key="id">1186</item><item key="shortUrl">{{refseqprotein}}</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">No summary provided.</item><item key="in">plugin</item><item key="owner"><item key="username">scm</item><item key="url">/profile/9200/scm</item><item key="name">scm</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">protein</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description"/><item key="tags"><item>network</item></item><item key="url">http://giant.princeton.edu/contexts/integration/?id=202&amp;gene={{entrezgene}}</item><item key="lastmodified">2015-09-10 21:27:26</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="created">2015-09-10 21:27:26</item><item key="id">1193</item><item key="shortUrl">giant.princeton.edu</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Genome- scale Integrated Analysis of Networks in Tissues</item><item key="in">plugin</item><item key="owner"><item key="username">ben</item><item key="url">/profile/9358/ben</item><item key="name">ben</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">GIANT</item></item><item><item key="rating_data"><item key="avg_stars">10</item><item key="total">1</item><item key="avg">5</item></item><item key="options">None</item><item key="description"/><item key="created">2015-10-21 08:21:12</item><item key="url">http://www.scbt.com/display.php?category=Antibody&amp;table=&amp;search_catalog=</item><item key="lastmodified">2015-10-21 08:25:05</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="popularity">0.0</item><item key="id">1198</item><item key="shortUrl">www.scbt.com</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">SANTA</item><item key="in">plugin</item><item key="owner"><item key="username">a6523130</item><item key="url">/profile/9372/a6523130</item><item key="name">a6523130</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">SANTA</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0</item><item key="description"> </item><item key="tags"><item>google</item><item>literature</item><item>scholar</item></item><item key="url">https://scholar.google.ca/scholar?hl=en&amp;q={{symbol}}</item><item key="lastmodified">2016-02-21 23:11:34</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="created">2016-02-21 23:11:34</item><item key="id">1206</item><item key="shortUrl">scholar.google.ca</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description"/><item key="in">plugin</item><item key="owner"><item key="username">lilitmaria_</item><item key="url">/profile/9690/lilitmaria_</item><item key="name">Lilit Antonyan</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">Google Scholar</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="description"> </item><item key="created">2016-02-22 00:09:37</item><item key="url">http://www.mirbase.org/cgi-bin/query.pl?terms={{symbol}}</item><item key="lastmodified">2016-02-22 00:09:37</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="popularity">0</item><item key="id">1213</item><item key="shortUrl">www.mirbase.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description"/><item key="in">plugin</item><item key="owner"><item key="username">lilitmaria_</item><item key="url">/profile/9690/lilitmaria_</item><item key="name">Lilit Antonyan</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item><item>pig</item></item><item key="name">miRNA</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description">Search a Gene in a  HGDP - CEPH Human Genome Diversity Genotype Database V3.0.

Working example gene="THRAP3"</item><item key="tags"><item>gene</item><item>genetics</item><item>map</item><item>markers</item><item>snp</item></item><item key="url">http://www.cephb.fr/common/marker/markers.php?value_crit={{symbol}}&amp;dbase_crit=gene_symbol&amp;Submit=OK</item><item key="lastmodified">2016-03-23 14:51:22</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="created">2016-03-23 14:49:26</item><item key="id">1218</item><item key="shortUrl">www.cephb.fr</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">HGDP Gene</item><item key="in">plugin</item><item key="owner"><item key="username">yokofakun</item><item key="url">/profile/3118/yokofakun</item><item key="name">Pierre Lindenbaum</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">CEPH</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0</item><item key="description"> Atlas allows searching for both validated and putative miRs binding genes of interest.  May be searched by gene, miR, pathway, disease, and many more options.</item><item key="tags"><item>mirna</item></item><item key="url">http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/</item><item key="lastmodified">2016-03-25 15:07:32</item><item key="usage_data"><item key="layouts">0</item><item key="users">0</item></item><item key="created">2016-03-25 15:07:32</item><item key="id">1220</item><item key="shortUrl">zmf.umm.uni-heidelberg.de</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">Atlas for predicted and validated miRNA-target interactions</item><item key="in">plugin</item><item key="owner"><item key="username">hkinkead</item><item key="url">/profile/4701/hkinkead</item><item key="name">Heather Kinkead</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>zebrafish</item><item>thale-cress</item></item><item key="name">miRWalk 2.0</item></item><item><item key="rating_data"><item key="avg_stars">10</item><item key="total">1</item><item key="avg">5</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description">DIANA-TarBase is a manually curated catalogue of more than half a million published experimentally validated miRNA-gene interactions.  It identifies both positive or negative experimental results, the utilized experimental methodology, experimental conditions including cell/tissue type and treatment. Searches can be done through gene or miRNA names.</item><item key="tags"><item>microrna</item><item>mirna</item><item>regulation</item><item>target</item></item><item key="url">http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&amp;genes={{symbol}}</item><item key="lastmodified">2016-05-04 15:01:17</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="created">2016-05-04 15:01:16</item><item key="id">1225</item><item key="shortUrl">diana.imis.athena-innovation.gr</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">microRNA-target interactions database</item><item key="in">plugin</item><item key="owner"><item key="username">eyleen.corrales</item><item key="url">/profile/9858/eyleen.corrales</item><item key="name">Eyleen Corrales</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item><item>mouse</item><item>rat</item><item>fruitfly</item><item>nematode</item><item>zebrafish</item><item>thale-cress</item><item>frog</item></item><item key="name">DIANA-TarBase v7.0</item></item><item><item key="rating_data"><item key="avg_stars">0</item><item key="total">0</item><item key="avg">0</item></item><item key="options">None</item><item key="popularity">0.0</item><item key="description">MyGene2 is a portal through which families with rare genetic conditions who are interested in sharing their health and genetic information can connect with other families, clinicians, and researchers. The genetic cause of most rare conditions is unknown and as a result, most families who undergo exome sequencing or whole genome sequencing do not receive a diagnosis. By sharing information through MyGene2, a family can help and even participate in the discovery of new genetic conditions and the genes underlying these conditions.

Families with rare genetic conditions may use MyGene2 to search for and contact other families who have the same condition or mutations in the same gene in order to share information and offer support. Families have the option to make the information they submit to MyGene2 available to anyone visiting the site (i.e., public) or available to only registered users who have also contributed data to MyGene2. Families also have the choice of whether or not they want to be contacted by clinicians and researchers or other families.

Clinicians who have evaluated families with rare conditions may use MyGene2 to identify and contact families with the same rare condition and / or candidate gene.

Researchers studying a gene or families with a rare condition may use MyGene2 to identify and contact other families who have the same rare condition or candidate gene.</item><item key="tags"><item>gene</item><item>genetic-disorder</item><item>genetics</item><item>variant</item></item><item key="url">https://mygene2.org/MyGene2/variantsbygene?gene={{symbol}}</item><item key="lastmodified">2016-06-28 23:34:16</item><item key="usage_data"><item key="layouts">0.0</item><item key="users">0</item></item><item key="created">2016-06-28 23:34:04</item><item key="id">1232</item><item key="shortUrl">mygene2.org</item><item key="role_permission"><item>biogpsusers</item></item><item key="short_description">MyGene2 is a portal through which families with rare genetic conditions can connect with other families, clinicians, and researchers.</item><item key="in">plugin</item><item key="owner"><item key="username">cwu</item><item key="url">/profile/2/cwu</item><item key="name">Chunlei Wu</item></item><item key="permission_style">public</item><item key="type">iframe</item><item key="species"><item>human</item></item><item key="name">MyGene2</item></item></data></biogps>
