Plugin: FuncBase

FuncBase is a public database of predicted gene-function annotations for Yeast, Mouse and Human genes, overlayed upon the experimentally verified annotations as taken from the SGD, MGI and Ensembl Gene databases, respectively. FuncBase displays three aspects of gene function predictions: - First, for a particular gene, users can view all functions ranked by certainty that the corresponding gene-function pair is a true annotation. - Second, for a particular function, users can view all genes ranked by certainty. - The third aspect is functional linkage predictions, displayed alongside the first two aspects as gene-centered and function-centered images, respectively, and editable via Cytoscape. These functional linkage graphs are independently informative, though they are also used as a step in one of the gene function prediction techniques whose certainty scores are displaying on this site, so they can be treated as evidence.

Species:

human, mouse

URL Template:

http://func.med.harvard.edu/human/genes/list_functional_scores/ENTREZ_GENE:{{EntrezGene}}

Updated:

May 3, 2011

Registered:

June 2, 2010