Plugin: OMIM disorders where gene is linked to pathogenesis

This is an example plugin that uses the bio2rdf SPARQL interface http://atlas.bio2rdf.org/sparql . It requests OMIM disorders that where the gene in question is mentioned in the text describing pathogenesis. The query that makes this work (and is embedded in the URL) is: PREFIX omim: <http://bio2rdf.org/ns/omim#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> select distinct ?OMIM_disorder where { ?s omim:PATHOGENESIS ?o . ?o bif:contains "VEGF" . ?s rdf:type omim:GeneticDisorder . ?s rdfs:label ?OMIM_disorder }

Species:

human

URL Template:

http://atlas.bio2rdf.org/sparql?default-graph-uri=&query=PREFIX+omim%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fomim%23%3E%0D%0APREFIX+rdfs%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0D%0Aselect+distinct+%3FOMIM_disorder+where+%7B%0D%0A%3Fs+omim%3APATHOGENESIS+%3Fo+.%0D%0A%3Fo+bif%3Acontains+%22{{Symbol}}%22+.+%0D%0A%3Fs+rdf%3Atype+omim%3AGeneticDisorder+.%0D%0A%3Fs+rdfs%3Alabel+%3FOMIM_disorder%0D%0A%7D&format=text%2Fhtml

Updated:

May 3, 2011

Registered:

March 6, 2010