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Home › Plugin Library › COMPARTMENTS

Plugin: COMPARTMENTS

0 ratings | 4 users | 4 layouts

Subcellular localization derived from curated knowledge, high-throughput screens, automatic text mining, and sequence-based predictions

Registered by Lars Juhl Jensen
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COMPARTMENTS is a frequently updated web resource that integrates evidence on protein subcellular localization from manually curated literature, high-throughput screens, automatic text mining, and sequence-based prediction methods. We map all evidence to common protein identifiers and Gene Ontology terms, and further unify it by assigning confidence scores that facilitate comparison of the different types and sources of evidence and visualize these scores on a schematic cell.

Species:
human, mouse, rat, fruitfly, nematode, thale-cress

URL Template:
http://compartments.jensenlab.org/Fetch?query={{uniprot}}

Updated:
March 25, 2016

Registered:
July 30, 2015


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Tags

  • localization
  • prediction
  • screening
  • text-mining

Often Used With

  • Gene Identifiers
  • Gene Wiki
  • Gene expression/activity chart
  • Gene Function
  • ARCHS4

Other Formats

JSON    XML
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