<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">1853</item><item key="factors"><item><item key="T-ALL-7"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 14</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="MLL-2"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 86</item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="T-ALL-9"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 21</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-10"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 59</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-22"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 94</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-24"><item key="STRAIN">ALL-SIL</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-4"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 6</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-2"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 18</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-14"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 33</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-2"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 3</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-15"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 74</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="Hyperdip50-4"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 34</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-33"><item key="STRAIN">PER-487</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-13"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 68</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="Hyperdip50-11"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 61</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="BCR-ABL-1"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">BCR-ABL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 16</item><item key="CLINICAL HISTORY">prognostic subgroup: BCR-ABL</item></item></item><item><item key="MLL-3"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 88</item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="T-ALL-21"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">peripheral blood</item><item key="INDIVIDUAL">patient 33</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-1"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 5</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-8"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 17</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="TEL-AML1-1"><item key="STRAIN">PER-608</item><item key="CHROMOSOMAL ABNORMALITY">TEL-AML1</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: TEL-AML1</item></item></item><item><item key="T-ALL-20"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">peripheral blood</item><item key="INDIVIDUAL">patient 27</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="E2A-PBX1-1"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">E2A-PBX1</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 47</item><item key="CLINICAL HISTORY">prognostic subgroup: E2A-PBX1</item></item></item><item><item key="E2A-PBX1-2"><item key="STRAIN">PER-278</item><item key="CHROMOSOMAL ABNORMALITY">E2A-PBX1</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: E2A-PBX1</item></item></item><item><item key="T-ALL-36"><item key="STRAIN">PER-604</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-37"><item key="STRAIN">PER-606</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-31"><item key="STRAIN">PER-255</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-13"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 27</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-1"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 2</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-11"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 24</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-32"><item key="STRAIN">PER-427</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="BCR-ABL-3"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">BCR-ABL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 25</item><item key="CLINICAL HISTORY">prognostic subgroup: BCR-ABL</item></item></item><item><item key="T-ALL-16"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 71</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-6"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 11</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-12"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 65</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-11"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 24</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-26"><item key="STRAIN">DU528</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-14"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 73</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-19"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 26</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-17"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 76</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="Hyperdip50-7"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 48</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-30"><item key="STRAIN">PER-117</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-35"><item key="STRAIN">PER-550</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="MLL-4"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 90</item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="Hyperdip50-5"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 43</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="MLL-5"><item key="STRAIN">PER-377</item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="T-ALL-29"><item key="STRAIN">MOLT4</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-8"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 50</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="Hyperdip50-16"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 75</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-5"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 10</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="MLL-7"><item key="STRAIN">PER-490</item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="Hyperdip50-3"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 20</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-10"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 23</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-15"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 41</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-25"><item key="STRAIN">CEM-CCRF</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-23"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">peripheral blood</item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-18"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">peripheral blood</item><item key="INDIVIDUAL">patient 24</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-19"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 26</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="MLL-1"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 9</item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="BCR-ABL-3"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">BCR-ABL</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 25</item><item key="CLINICAL HISTORY">prognostic subgroup: BCR-ABL</item></item></item><item><item key="T-ALL-34"><item key="STRAIN">PER-537</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="Hyperdip50-6"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 45</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item><item><item key="T-ALL-28"><item key="STRAIN">Jurkat</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="T-ALL-3"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 4</item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="MLL-6"><item key="STRAIN">PER-485</item><item key="CHROMOSOMAL ABNORMALITY">MLL</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: MLL</item></item></item><item><item key="T-ALL-27"><item key="STRAIN">HSB2</item><item key="CHROMOSOMAL ABNORMALITY">  </item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: T-ALL</item></item></item><item><item key="E2A-PBX1-3"><item key="STRAIN">PER-371</item><item key="CHROMOSOMAL ABNORMALITY">E2A-PBX1</item><item key="ORGANISM PART">  </item><item key="INDIVIDUAL">  </item><item key="CLINICAL HISTORY">prognostic subgroup: E2A-PBX1</item></item></item><item><item key="Hyperdip50-9"><item key="STRAIN">  </item><item key="CHROMOSOMAL ABNORMALITY">Hyperdip50</item><item key="ORGANISM PART">bone marrow</item><item key="INDIVIDUAL">patient 56</item><item key="CLINICAL HISTORY">prognostic subgroup: Hyperdip50</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">3</item><item key="summary_wrapped">We examined published microarray data from 104 acute lymphoblastic leukaemia patient specimens, that represent six different subgroups...</item><item key="pubmed_id">17002788</item><item key="geo_gse_id">E-TABM-125</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">5</item><item key="sample_count">68</item><item key="tags"><item>tree</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">transcription-profiling-by-array-of-bone-marrow-an</item><item key="geo_id_plat">E-TABM-125_A-AFFY-33</item><item key="name">Transcription profiling by array of bone marrow and peripheral blood samples from childhood leukemia patients</item><item key="created">Jun.20, 2014</item><item key="summary">We examined published microarray data from 104 acute lymphoblastic leukaemia patient specimens, that represent six different subgroups defined by cytogenetic features and immunophenotypes. Using the decision-tree based supervised learning algorithm Random Forest (RF), we determined a small set of genes for optimal subgroup distinction and subsequently validated their predictive power in an independent cohort of 68 specimens that were assessed using Affymetrix HG-U133A arrays.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-125</item><item key="species">human</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-125/samples/</item></data></biogps>
