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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">8020</item><item key="factors"><item><item key="GSM247567"><item key="AGE">11 weeks</item><item key="GENOTYPE">wild-type</item><item key="ORGANISM PART">liver</item><item key="SEX">female</item></item></item><item><item key="GSM247568"><item key="AGE">11 weeks</item><item key="GENOTYPE">wild-type</item><item key="ORGANISM PART">liver</item><item key="SEX">male</item></item></item><item><item key="GSM247569"><item key="AGE">11 weeks</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver</item><item key="SEX">male</item></item></item><item><item key="GSM247570"><item key="AGE">11 weeks</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver</item><item key="SEX">female</item></item></item><item><item key="GSM24757"><item key="AGE">21 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver dysplasia nodules</item><item key="SEX">female</item></item></item><item><item key="GSM247572"><item key="AGE">21 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver dysplasia nodules adjacent</item><item key="SEX">female</item></item></item><item><item key="GSM247573"><item key="AGE">18 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver tumor</item><item key="SEX">male</item></item></item><item><item key="GSM247574"><item key="AGE">18 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver tumor adjacent</item><item key="SEX">male</item></item></item><item><item key="GSM247575"><item key="AGE">14 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver tumor</item><item key="SEX">female</item></item></item><item><item key="GSM247576"><item key="AGE">14 months</item><item key="GENOTYPE">Gnmt knockout</item><item key="ORGANISM PART">liver tumor adjacent</item><item key="SEX">female</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">We report that 7 of 7 female Gnmt-/- mice developed hepatocellular carcinoma (HCC), the most common form of liver cancer, at the mean age...</item><item key="pubmed_id">19035462</item><item key="geo_gse_id">E-GEOD-9809</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">4</item><item key="sample_count">10</item><item key="tags"><item>cancer</item><item>carcinoma</item><item>cell</item><item>hepatocellular carcinoma</item><item>liver</item><item>liver cancer</item><item>protein</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">expression-data-from-gnmt-knockout-mice</item><item key="geo_id_plat">E-GEOD-9809_A-AFFY-45</item><item key="name">Expression data from GNMT knockout mice</item><item key="created">Nov.21, 2014</item><item key="summary">We report that 7 of 7 female Gnmt-/- mice developed hepatocellular carcinoma (HCC), the most common form of liver cancer, at the mean age of 16.1 months. In contrast, only one-third (2/6) of male Gnmt-/- mice had HCC, the remaining had either premature death or liver necrosis. Microarray analysis showed that genes involved in the following pathways were deregulated in different stages of tumorigenesis: S-adenosylmethionine (SAM)-dependent methyltransferases, metabolism, signal transduction, cell proliferation, cell adhesion and immune responses. This study reveals that GNMT plays an important role in the prevention of hapatotumorigenesis through regulating DNA methylaiton and oxidative stress signaling pathways. We postulate that GNMT is a stress-responsive protein and its expression may account for the gender difference of the susceptibility to liver cancer. Keywords: Gnmt knockout Liver tissues from wild-type or Gnmt knockout mice at young ages, devoloping dysplasia nodules or HCC were used for RNA extraction and hybridization on Affymetrix microarrays. For 11 weeks old mice, total RNA were mixed in equal proportion from 3 mice.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-9809</item><item key="species">mouse</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-9809/samples/</item></data></biogps>
