<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">7771</item><item key="factors"><item><item key="GSM155600"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155600"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155600"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155634"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item><item><item key="GSM155634"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item><item><item key="GSM155634"><item key="%FOXP3+ AFTER RESTAINING">not specified</item><item key="SORTING">MACS for CD25- cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25- cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item><item><item key="GSM155637"><item key="%FOXP3+ AFTER RESTAINING">94%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155638"><item key="%FOXP3+ AFTER RESTAINING">96%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155638"><item key="%FOXP3+ AFTER RESTAINING">96%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">B6 congenic for MHC Class II Ag7 (H2g7)</item></item></item><item><item key="GSM155640"><item key="%FOXP3+ AFTER RESTAINING">89%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item><item><item key="GSM15564"><item key="%FOXP3+ AFTER RESTAINING">95%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item><item><item key="GSM15564"><item key="%FOXP3+ AFTER RESTAINING">95%</item><item key="SORTING">MACS for CD25+ cells, then double-sorted for CD8a-CD11b-CD69-B220- CD4+CD25hi cells</item><item key="GENETIC BACKGROUND">NOD</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">The NOD (nonobese diabetic) mouse strain develops a characteristic autoimmune syndrome that closely resembles human type I diabetes.  It...</item><item key="pubmed_id">19073938</item><item key="geo_gse_id">E-GEOD-6813</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">12</item><item key="tags"><item>cell</item><item>syndrome</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">gene-expression-profiles-of-cd4cd25-tregs-from-nod</item><item key="geo_id_plat">E-GEOD-6813_A-AFFY-45</item><item key="name">Gene expression profiles of CD4+CD25+ Tregs from NOD and B6.H2g7 mice</item><item key="created">Nov.13, 2014</item><item key="summary">The NOD (nonobese diabetic) mouse strain develops a characteristic autoimmune syndrome that closely resembles human type I diabetes.  It has been suggested that NOD mice exhibit both numerical deficiency in CD4+CD25+ regulatory T cells (Treg) and reduced suppressive activity.  We compared sorted CD4+CD25+ Tregs from the spleens of 6-7 week-old female NOD and nondiabetic B6.H2g7 mice.  Tregs were 93&#177;2% and 95&#177;1% Foxp3+ in NOD and B6.H2g7 cells, respectively, on post-sort reanalysis.  "Conventional" CD4+CD25- T cells (Tconv) are included as reference populations.  Surprisingly, Treg "signature" is similar between the two strains, with only a few probesets that subtly deviate. Keywords: Cell population comparison from two mouse strains. For each strain (NOD and B6.g7), we analyzed two populations: CD4+CD25+ Treg and CD4+CD25- Tconv cells, for a total of four distinct populations.  RNA from three mice were pooled for each replicate; there are three independent replicates for each population.  After RMA normalization, intensity values were averaged across the three replicates and analyzed.  We calculated the ratio of Treg/Tconv intensity values for each strain and compared the results.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-6813</item><item key="species">mouse</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-6813/samples/</item></data></biogps>
