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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">human</item><item key="factors"><item><item key="GSM1371879"><item key="PROTOCOL">without poly I:C</item><item key="GENOTYPE">Neat1v2 vector transfection</item></item></item><item><item key="GSM1371878"><item key="PROTOCOL">without poly I:C</item><item key="GENOTYPE">mock vector transfection</item></item></item><item><item key="GSM1371877"><item key="PROTOCOL">poly I:C stimulation</item><item key="GENOTYPE">siNEAT1 knockdown (siNEAT1 transfection)</item></item></item><item><item key="GSM1371876"><item key="PROTOCOL">without poly I:C</item><item key="GENOTYPE">siNEAT1 knockdown (siNEAT1 transfection)</item></item></item><item><item key="GSM1371875"><item key="PROTOCOL">poly I:C stimulation</item><item key="GENOTYPE">control (siCTRL transfection)</item></item></item><item><item key="GSM1371874"><item key="PROTOCOL">without poly I:C</item><item key="GENOTYPE">control (siCTRL transfection)</item></item></item></item><item key="id">2042</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">Although thousands of long non-coding RNAs (lncRNAs) are localized in the nucleus, only a few dozen have been functionally characterized....</item><item key="geo_gse_id">E-GEOD-56936</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">6</item><item key="tags"><item>body</item><item>nuclear body</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">expression-data-from-neat1-regulated-genes-with-or</item><item key="geo_id_plat">E-GEOD-56936_A-AFFY-44</item><item key="name">Expression data from NEAT1 regulated genes with or without polyI:C</item><item key="created">Jul.10, 2014</item><item key="summary">Although thousands of long non-coding RNAs (lncRNAs) are localized in the nucleus, only a few dozen have been functionally characterized. We found that nuclear paraspeckle assembly transcript 1 (NEAT1), an essential lncRNA for the formation of nuclear body paraspeckles, is induced by poly I:C stimulation, resulting in excess formation of paraspeckles. Using microarray analysis, we investigated whether NEAT1 induction followed by excess formation of paraspeckles was involved in poly I:C-inducible gene expression. We want to know the NEAT1-regulated genes. To the end, HeLa TO cells with and without poly I:C stimulation and NEAT1-knock down cells with and without poly I:C stimulation and cells transfected with mock plasmid or Neat1v2 expression plasmid alone  were used for RNA extraction and hybridization on Affymetrix microarrays.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-56936</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-56936/samples/</item></data></biogps>
