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Home › Dataset Library › Expression data from NEAT1 regulated genes with or without polyI:C

Dataset: Expression data from NEAT1 regulated genes with or without polyI:C

Although thousands of long non-coding RNAs (lncRNAs) are localized in the nucleus, only a few dozen have been functionally characterized....

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Although thousands of long non-coding RNAs (lncRNAs) are localized in the nucleus, only a few dozen have been functionally characterized. We found that nuclear paraspeckle assembly transcript 1 (NEAT1), an essential lncRNA for the formation of nuclear body paraspeckles, is induced by poly I:C stimulation, resulting in excess formation of paraspeckles. Using microarray analysis, we investigated whether NEAT1 induction followed by excess formation of paraspeckles was involved in poly I:C-inducible gene expression. We want to know the NEAT1-regulated genes. To the end, HeLa TO cells with and without poly I:C stimulation and NEAT1-knock down cells with and without poly I:C stimulation and cells transfected with mock plasmid or Neat1v2 expression plasmid alone were used for RNA extraction and hybridization on Affymetrix microarrays.

Species:
human

Samples:
6

Source:
E-GEOD-56936

Updated:
Dec.12, 2014

Registered:
Jul.10, 2014


Factors: (via ArrayExpress)
Sample PROTOCOL GENOTYPE
GSM1371879 without poly I:C Neat1v2 vector transfection
GSM1371878 without poly I:C mock vector transfection
GSM1371877 poly I:C stimulation siNEAT1 knockdown (siNEAT1 transfection)
GSM1371876 without poly I:C siNEAT1 knockdown (siNEAT1 transfection)
GSM1371875 poly I:C stimulation control (siCTRL transfection)
GSM1371874 without poly I:C control (siCTRL transfection)

Tags

  • body
  • nuclear body

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