<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">human</item><item key="factors"><item><item key="GSM1207730"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">not specified</item><item key="AGE">12</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">frontal lobe</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM1207729"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">not specified</item><item key="AGE">5</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">female</item><item key="LOCATION">temporal lobe</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM1207728"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">not specified</item><item key="AGE">18</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">female</item><item key="LOCATION">the fourth ventricle &amp; brain stem</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM1207727"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">not specified</item><item key="AGE">14</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">female</item><item key="LOCATION">parieto-occipital</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM1207726"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">not specified</item><item key="AGE">24</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">thalamus</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM958493"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">pons</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">6</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">K27</item></item></item><item><item key="GSM958490"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">thalamic</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">7</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">K27</item></item></item><item><item key="GSM885014"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">NA</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">38</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">Mesenchymal</item></item></item><item><item key="GSM8850"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">thalamic</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">23</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">K27</item></item></item><item><item key="GSM885010"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">NA</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">36</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">Mesenchymal</item></item></item><item><item key="GSM885006"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">NA</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">34</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">MUT</item><item key="SUBGROUP">Mesenchymal</item></item></item><item><item key="GSM885005"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">NA</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">46</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">Mesenchymal</item></item></item><item><item key="GSM88500"><item key="H3F3A STATUS">WT</item><item key="TUMOR LOCATION">frontal lobe</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">13</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">Mesenchymal</item></item></item><item><item key="GSM885000"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">thalamic</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">11</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">K27</item></item></item><item><item key="GSM884997"><item key="H3F3A STATUS">K27M</item><item key="TUMOR LOCATION">Ventricular</item><item key="H3.3_STATUS">not specified</item><item key="AGE">not specified</item><item key="AGE AT DIAGNOSIS YEARS">10</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">WT</item><item key="SUBGROUP">K27</item></item></item><item><item key="GSM855968"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">K27M</item><item key="AGE">8</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855967"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">K27M</item><item key="AGE">6</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">female</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855966"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">K27M</item><item key="AGE">11</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855963"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">wt</item><item key="AGE">14</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855957"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">K27M</item><item key="AGE">10</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855963"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">wt</item><item key="AGE">14</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item><item><item key="GSM855947"><item key="H3F3A STATUS">not specified</item><item key="TUMOR LOCATION">not specified</item><item key="H3.3_STATUS">K27M</item><item key="AGE">5</item><item key="AGE AT DIAGNOSIS YEARS">not specified</item><item key="SEX">male</item><item key="LOCATION">not specified</item><item key="IDH1 STATUS">not specified</item><item key="SUBGROUP">not specified</item></item></item></item><item key="id">2035</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">Pediatric high-grade gliomas (pHGGs) harboring the K27M mutation of H3F3A (histone H3.3) are characterized by global reduction of the...</item><item key="pubmed_id">24183680</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">9</item><item key="sample_count">22</item><item key="tags"><item>genome</item><item>histone</item><item>histone h3</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-49822_A-AFFY-44</item><item key="slug">gene-expression-data-of-phgg-tumor-samples</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49822</item><item key="geo_gds_id"/><item key="name">Gene expression data of pHGG tumor samples</item><item key="created">Jul.10, 2014</item><item key="summary">Pediatric high-grade gliomas (pHGGs) harboring the K27M mutation of H3F3A (histone H3.3) are characterized by global reduction of the repressive histone mark H3K27me3 and DNA hypomethylation. Analysis of K27M-induced changes on H3K27me3 occupancy and DNA methylation at differentially expresed genes (K27M vs. wild-type H3.3) in primary pHGG tumor samples. 22 glioblastoma samples from pHGG patients were selected for RNA extraction and hybridization on Affymetrix Affymetrix Human Genome U133 Plus 2.0 Arrays. Expression profiling data of 17 pHHGs are part of our previous study (GSE36245 or GSE34824).</item><item key="geo_gse_id">E-GEOD-49822</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-49822/samples/</item></data></biogps>
