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Home › Dataset Library › Smoking and Obesity Related Molecular Alterations in Clear Cell Renal Cell Carcinoma

Dataset: Smoking and Obesity Related Molecular Alterations in Clear Cell Renal Cell Carcinoma

Both cigarette smoking and obesity have been implicated in increased risk of clear cell renal cell carcinoma (ccRCC); however, there are...

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Both cigarette smoking and obesity have been implicated in increased risk of clear cell renal cell carcinoma (ccRCC); however, there are limited data regarding the molecular mechanisms that underlie these associations. We used a multi-stage design to identify and validate specific molecular targets that are associated with smoking or obesity-related ccRCC. The data deposited herein are comprised of two batches of samples that were processed at two different time periods (please see Supplementary Data in Eckel-Passow et al. Carcinogenesis first published online December 28, 2013; doi:10.1093/carcin/bgt485).  The first batch of samples consisted of 12 obese subjects and 13 non-obese subjects; all of whom were self-reported never-smokers.  Each of the 12 obese subjects had  microarray data available on both the patient-matched tumor and adjacent-normal tissues.  All of the 13 non-obese subjects had microarray data available on the tumor tissue; however, only 9 of these 13 also had microarray data available on the patient-matched adjacent-normal tissue.  The second batch of samples consisted of 16 self-reported smokers and 19 self-reported never smokers; all of whom were non-obese.   This second batch of samples also contained 7 subjects who were obese and self-reported smokers.  All subjects in the second batch had microarray data available on both the patient-matched tumor and adjacent-normal tissues.  Lastly, two of the 13 patients in batch 1 were replicated in batch 2; both were non-obese and a non-smoker.  These two technical replicates (two tumor samples and two normal samples) were included during normalization but removed prior to analysis. The cel files are Par007U133Plus2.0.CEL Par008U133Plus2.0.CEL Par041U133Plus2.0.CEL Par042U133Plus2.0.CEL The metadata "duplicate" column can also be used to exclude these samples.

Species:
human

Samples:
130

Source:
E-GEOD-46699

Updated:
Dec.12, 2014

Registered:
Jul.11, 2014


Factors: (via ArrayExpress)
Sample OBESE PATIENT ORGANISM PART BATCH DUPLICATE SMOKING
GSM1304423 no 28 normal 1 yes no
GSM1304422 no 28 Tumor 1 yes no
GSM130442 no 160 normal 1 yes no
GSM1304420 no 160 Tumor 1 yes no
GSM1134889 no 684 Tumor 1 no no
GSM1134888 no 559 Tumor 1 no no
GSM1134887 no 523 Tumor 1 no no
GSM1134886 yes 521 normal 1 no no
GSM1134885 yes 521 Tumor 1 no no
GSM1134884 no 806 normal 1 no no
GSM1134883 no 806 Tumor 1 no no
GSM1134882 no 799 Tumor 1 no no
GSM113488 no 785 normal 1 no no
GSM1134880 no 785 Tumor 1 no no
GSM1134879 yes 41 normal 1 no no
GSM1134878 yes 41 Tumor 1 no no
GSM1134877 yes 20 normal 1 no no
GSM1134876 yes 20 Tumor 1 no no
GSM1134875 no 452 normal 1 no no
GSM1134874 no 452 Tumor 1 no no
GSM1134873 yes 407 normal 1 no no
GSM1134872 yes 407 Tumor 1 no no
GSM113487 yes 363 normal 1 no no
GSM1134870 yes 363 Tumor 1 no no
GSM1134869 no 275 normal 1 no no
GSM1134868 no 275 Tumor 1 no no
GSM1134867 yes 264 normal 1 no no
GSM1134866 yes 264 Tumor 1 no no
GSM1134865 yes 252 normal 1 no no
GSM1134864 yes 252 Tumor 1 no no
GSM1134863 no 202 normal 1 no no
GSM1134862 no 202 Tumor 1 no no
GSM113486 no 196 normal 1 no no
GSM1134860 no 196 Tumor 1 no no
GSM1134859 yes 181 normal 1 no no
GSM1134858 yes 181 Tumor 1 no no
GSM1134857 yes 177 normal 1 no no
GSM1134856 yes 177 Tumor 1 no no
GSM1134855 yes 163 normal 1 no no
GSM1134854 yes 163 Tumor 1 no no
GSM1134853 yes 69 normal 1 no no
GSM1134852 yes 69 Tumor 1 no no
GSM113485 yes 60 normal 1 no no
GSM1134850 yes 60 Tumor 1 no no
GSM1134849 no 18 normal 1 no no
GSM1134848 no 18 Tumor 1 no no
GSM1134847 no 888 normal 2 no yes
GSM1134846 no 888 Tumor 2 no yes
GSM1134845 no 878 normal 2 no yes
GSM1134844 no 878 Tumor 2 no yes
GSM1134843 no 263 normal 2 no yes
GSM1134842 no 263 Tumor 2 no yes
GSM113484 no 1048 normal 2 no no
GSM1134840 no 1048 Tumor 2 no no
GSM1134839 no 1018 normal 2 no yes
GSM1134838 no 1018 Tumor 2 no yes
GSM1134837 no 871 normal 2 no yes
GSM1134836 no 871 Tumor 2 no yes
GSM1134835 yes 865 normal 2 no yes
GSM1134834 yes 865 Tumor 2 no yes
GSM1134833 no 853 normal 2 no yes
GSM1134832 no 853 Tumor 2 no yes
GSM113483 no 829 normal 2 no yes
GSM1134830 no 829 Tumor 2 no yes
GSM1134829 no 746 normal 2 no yes
GSM1134828 no 746 Tumor 2 no yes
GSM1134827 yes 740 normal 2 no yes
GSM1134826 yes 740 Tumor 2 no yes
GSM1134825 no 739 normal 2 no no
GSM1134824 no 739 Tumor 2 no no
GSM1134823 no 726 normal 2 no no
GSM1134822 no 726 Tumor 2 no no
GSM113482 no 723 normal 2 no no
GSM1134820 no 723 Tumor 2 no no
GSM1134819 no 712 normal 2 no no
GSM1134818 no 712 Tumor 2 no no
GSM1134817 yes 705 normal 2 no yes
GSM1134816 yes 705 Tumor 2 no yes
GSM1134815 no 670 normal 2 no yes
GSM1134814 no 670 Tumor 2 no yes
GSM1134813 no 652 normal 2 no no
GSM1134812 no 652 Tumor 2 no no
GSM11348 no 562 normal 2 no no
GSM1134810 no 562 Tumor 2 no no
GSM1134809 no 498 normal 2 no no
GSM1134808 no 498 Tumor 2 no no
GSM1134807 no 427 normal 2 no yes
GSM1134806 no 427 Tumor 2 no yes
GSM1134805 no 160 normal 2 no no
GSM1134804 no 160 Tumor 2 no no
GSM1134803 no 205 Tumor 2 no no
GSM1134802 no 205 normal 2 no no
GSM113480 no 194 Tumor 2 no no
GSM1134800 no 194 normal 2 no no
GSM1134799 no 192 Tumor 2 no no
GSM1134798 no 192 normal 2 no no
GSM1134797 yes 144 Tumor 2 no yes
GSM1134796 yes 144 normal 2 no yes
GSM1134795 no 129 Tumor 2 no no
GSM1134794 no 129 normal 2 no no
GSM1134793 yes 121 Tumor 2 no yes
GSM1134792 yes 121 normal 2 no yes
GSM113479 no 110 Tumor 2 no yes
GSM1134790 no 110 normal 2 no yes
GSM1134789 no 103 Tumor 2 no yes
GSM1134788 no 103 normal 2 no yes
GSM1134787 yes 98 Tumor 2 no yes
GSM1134786 yes 98 normal 2 no yes
GSM1134785 no 96 Tumor 2 no no
GSM1134784 no 96 normal 2 no no
GSM1134783 no 92 Tumor 2 no no
GSM1134782 no 92 normal 2 no no
GSM113478 no 74 Tumor 2 no yes
GSM1134780 no 74 normal 2 no yes
GSM1134779 yes 55 Tumor 2 no yes
GSM1134778 yes 55 normal 2 no yes
GSM1134777 no 53 Tumor 2 no yes
GSM1134776 no 53 normal 2 no yes
GSM1134775 no 43 Tumor 2 no no
GSM1134774 no 43 normal 2 no no
GSM1134773 no 42 Tumor 2 no yes
GSM1134772 no 42 normal 2 no yes
GSM113477 no 28 Tumor 2 no no
GSM1134770 no 28 normal 2 no no
GSM1134769 no 16 Tumor 2 no no
GSM1134768 no 16 normal 2 no no
GSM1134767 no 14 Tumor 2 no yes
GSM1134766 no 14 normal 2 no yes
GSM1134765 no 1 Tumor 2 no no
GSM1134764 no 1 normal 2 no no

Tags

  • carcinoma
  • cell
  • clear cell
  • column
  • obesity
  • renal cell carcinoma

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