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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">human</item><item key="factors"><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item><item><item key="GSM1097014"><item key="CD27">high</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097013"><item key="CD27">low</item><item key="CELL TYPE">proliferating B cells</item><item key="DIVIDED IN VITRO">yes</item></item></item><item><item key="GSM1097012"><item key="CD27">low</item><item key="CELL TYPE">undivided B cells</item><item key="DIVIDED IN VITRO">no</item></item></item></item><item key="id">2511</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">During the human B cell (Bc) recall response, rapid cell division results in multiple Bc subpopulations. The TLR-9 agonist CpG...</item><item key="geo_gse_id">E-GEOD-45113</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">18</item><item key="tags"><item>cell</item><item>cytokine</item><item>genome</item><item>plasmablast</item><item>surface</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">gene-expression-of-cpg-activated-memory-b-cells</item><item key="geo_id_plat">E-GEOD-45113_A-AFFY-44</item><item key="name">Gene expression of CpG-activated memory B cells</item><item key="created">Jul.12, 2014</item><item key="summary">During the human B cell (Bc) recall response, rapid cell division results in multiple Bc subpopulations. The TLR-9 agonist CpG oligodeoxynucleotide, combined with cytokines, causes Bc activation and division in vitro and increased CD27 surface expression in a sub-population of Bc. We hypothesized that the proliferating CD27lo subpopulation, which has a lower frequency of antibody-secreting cells (ASC) than CD27hi plasmablasts, provides alternative functions such as cytokine secretion, costimulation, or antigen presentation. We performed genome-wide transcriptional analysis of CpG activated Bc sorted into undivided, proliferating CD27lo and proliferating CD27hi subpopulations. Our data supported an alternative hypothesis, that CD27lo cells are a transient pre-plasmablast population, expressing genes associated with Bc receptor editing. Undivided cells had an active transcriptional program of non-ASC B cell functions, including cytokine secretion and costimulation, suggesting a link between innate and adaptive Bc responses. Transcriptome analysis suggested a gene regulatory network for CD27lo and CD27hi Bc differentiation. 18 B cell samples from 6 subjects. From each subject, 3 in vitro B cell populations were isolated: undivided cells, proliferating cells with low CD27 (marker of antibody secretion), proliferating cells with high CD27</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45113</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45113/samples/</item></data></biogps>
