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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">human</item><item key="factors"><item><item key="GSM1078898"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078898"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078898"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078895"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item><item><item key="GSM1078895"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item><item><item key="GSM1078895"><item key="CELL LINE">SW480</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item><item><item key="GSM1078892"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078892"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078892"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-catenin</item></item></item><item><item key="GSM1078889"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item><item><item key="GSM1078889"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item><item><item key="GSM1078889"><item key="CELL LINE">DLD1</item><item key="TREATMENT">siRNA beta-galactosidase</item></item></item></item><item key="id">2173</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">To validate the suitability of two commonly used colorectal cancer cell lines, DLD1 and SW480, as model systems to study colorectal...</item><item key="geo_gse_id">E-GEOD-44097</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">12</item><item key="tags"><item>cancer</item><item>carcinoma</item><item>cell</item><item>colon</item><item>colon carcinoma</item><item>colorectal cancer</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">catenin-target-genes-in-colorectal-carcinoma-cell</item><item key="geo_id_plat">E-GEOD-44097_A-AFFY-44</item><item key="name">&#946;-catenin target genes in colorectal carcinoma cell lines with deregulated Wnt/&#946;-catenin signaling</item><item key="created">Jul.11, 2014</item><item key="summary">To validate the suitability of two commonly used colorectal cancer cell lines, DLD1 and SW480, as model systems to study colorectal carcinogenesis, we treated these cell lines with &#946;-catenin siRNA and identified &#946;-catenin target genes using DNA microarrays. The list of identified target genes was compared to previously published &#946;-catenin target genes found in the PubMed and the GEO databases. Based on the large number of &#946;-catenin target genes found to be similarly regulated in DLD1, SW480 and LS174T as well as the large overlap with confirmed &#946;-catenin target genes, we conclude that DLD1 and SW480 colon carcinoma cell lines are suitable model systems to study &#946;-catenin regulated genes and signaling pathways 12 arrays (2 cell lines, 2 treatments, 3 biological replicates)</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44097</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-44097/samples/</item></data></biogps>
