<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">mouse</item><item key="factors"><item><item key="GSM1072316"><item key="GENOTYPE">wild-type</item></item></item><item><item key="GSM1072316"><item key="GENOTYPE">wild-type</item></item></item><item><item key="GSM1072318"><item key="GENOTYPE">mutant (Gnptabc.3082insC)</item></item></item><item><item key="GSM1072318"><item key="GENOTYPE">mutant (Gnptabc.3082insC)</item></item></item></item><item key="id">7150</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">Mucolipidosis type II (MLII) is a severe inherited multisystemic disorder caused by mutations in the GNPTAB gene. Skeletal abnormalities...</item><item key="geo_gse_id">E-GEOD-43854</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">1</item><item key="sample_count">4</item><item key="tags"><item>bone</item><item>calvaria</item><item>cytosine</item><item>genome</item><item>mucolipidosis</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">expression-data-from-primary-osteoblasts-isolated</item><item key="geo_id_plat">E-GEOD-43854_A-AFFY-45</item><item key="name">Expression data from primary osteoblasts isolated from calvaria of Gnptab(c.3082insC) knock-in mice compared with osteoblasts isolated from wild-type littermates</item><item key="created">Nov.12, 2014</item><item key="summary">Mucolipidosis type II (MLII) is a severe inherited multisystemic disorder caused by mutations in the GNPTAB gene. Skeletal abnormalities are a predominant feature of MLII. Here we investigate the gene expression in a knock-in mouse model for mucolipidosis type II, generated by the insertion of a cytosine in the murine Gnptab gene (c.3082insC) that is homologous to a homozygous mutation in an MLII patient. Since osteoblasts are critically involved in regulating bone development and remodeling, a genome-wide expression analysis was performed  with RNA isolated from primary cultures of osteoblasts originating from MLII knock-in mice (KI) compared to RNA from wild-type (WT) osteoblasts to identify dysregulated genes involved in pathogenic mechanisms. Primary osteoblasts were isolated from calvaria of 5-day-old wild-type (WT) and MLII knock-in littermates (KI). RNA was extracted at day 10 of differentiation induced by ascorbic acid and beta-glycerophosphate and hybridization on Affymetrix microarrays. We used preparations of RNA from two individual primary cultures of osteoblasts for every genotype (WT_OB_I, WT_OB_II, KI_OB_I, KI_OB_II) and compared WT vs KI samples.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43854</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43854/samples/</item></data></biogps>
