Dataset: Expression data from breast cancer FNA biopsies from patients ( (USO samples)
Tumor samples were obtained from patients with stage II-III breast cancer before starting neoadjuvant chemotherapy with four cycles of...
Tumor samples were obtained from patients with stage II-III breast cancer before starting neoadjuvant chemotherapy with four cycles of 5-fluorouracil/epirubicin/cyclophosphamide (FEC) followed by four cycles of docetaxel/capecitabine (TX) on US Oncology clinical trial 02-103. Most patients with HER-2-positive cancer also received trastuzumab (H). Pre-treatment FNA from primary tumors were obtained and RNA extracted and hybridized to affymetrix microarrays according to manufacturer protocol.
- Species:
- human
- Samples:
- 91
- Source:
- E-GEOD-42822
- PubMed:
- 23158478
- Updated:
- Dec.12, 2014
- Registered:
- Jun.18, 2014
Factors:
(via ArrayExpress)
| Sample | PRECHEMO T | PRECHEMO N | GRADE | AGE | STATUS 1 | GREATER CHEMO SENSITIVE | TYPE |
|---|---|---|---|---|---|---|---|
| GSM1050667 | 2 | N0 | G3 | 64 | positive, 0: negative): 0 | 0.05856333 | FEC/TX+H |
| GSM1050666 | 2 | N1 | G3 | 44 | positive, 0: negative): 1 | 0.18077736 | FEC/TX+H |
| GSM1050665 | 4 | N2 | G3 | 49 | positive, 0: negative): 1 | 0.01726416 | FEC/TX+H |
| GSM1050664 | 3 | N1 | G1/2 | 50 | positive, 0: negative): 1 | 0.02877002 | FEC/TX+H |
| GSM1050663 | 3 | N3 | G3 | 49 | positive, 0: negative): 1 | 0.14001053 | FEC/TX+H |
| GSM1050662 | 2 | NA | G1/2 | 50 | positive, 0: negative): NA | 0.10840989 | FEC/TX+H |
| GSM105066 | 2 | NA | G3 | 49 | positive, 0: negative): NA | 0.07138129 | FEC/TX+H |
| GSM1050660 | 2 | N1 | G3 | 59 | positive, 0: negative): 1 | 0.05095919 | FEC/TX+H |
| GSM1050659 | 4 | N1 | NA | 44 | positive, 0: negative): 1 | 0.02804969 | FEC/TX+H |
| GSM1050658 | 4 | N2 | G1/2 | 58 | positive, 0: negative): 1 | 0.0630215 | FEC/TX+H |
| GSM1050657 | 3 | N1 | G1/2 | 38 | positive, 0: negative): 1 | 0.07041634 | FEC/TX+H |
| GSM1050656 | 2 | N2 | G1/2 | 58 | positive, 0: negative): 1 | 0.06156965 | FEC/TX+H |
| GSM1050655 | 3 | N0 | G3 | 59 | positive, 0: negative): 0 | 0.11100927 | FEC/TX+H |
| GSM1050654 | 2 | N0 | G3 | 50 | positive, 0: negative): 0 | 0.07474013 | FEC/TX+H |
| GSM1050653 | 3 | N2 | NA | 39 | positive, 0: negative): 1 | 0.21213988 | FEC/TX+H |
| GSM1050652 | 2 | N2 | G3 | 51 | positive, 0: negative): 1 | 0.0222852 | FEC/TX+H |
| GSM105065 | 3 | N1 | NA | 59 | positive, 0: negative): 1 | 0.091163 | FEC/TX+H |
| GSM1050650 | 3 | N0 | G3 | 55 | positive, 0: negative): 0 | 0.16775801 | FEC/TX+H |
| GSM1050649 | 3 | N1 | G3 | 56 | positive, 0: negative): 1 | 0.14907972 | FEC/TX+H |
| GSM1050648 | 3 | N1 | G1/2 | 56 | positive, 0: negative): 1 | 0.07524595 | FEC/TX+H |
| GSM1050647 | 3 | N0 | G1/2 | 46 | positive, 0: negative): 0 | 0.13853011 | FEC/TX+H |
| GSM1050646 | 4 | N1 | G1/2 | 48 | positive, 0: negative): 1 | 0.08165961 | FEC/TX+H |
| GSM1050645 | 2 | N1 | G1/2 | 37 | positive, 0: negative): 1 | 0.07454072 | FEC/TX+H |
| GSM1050644 | 2 | N1 | G3 | 51 | positive, 0: negative): 1 | 0.14463447 | FEC/TX+H |
| GSM1050643 | 2 | N0 | G3 | 41 | positive, 0: negative): 0 | 0.27449715 | FEC/TX+H |
| GSM1050642 | 3 | N0 | NA | 64 | positive, 0: negative): 0 | 0.045645192 | FEC/TX |
| GSM105064 | 2 | N0 | G3 | 61 | positive, 0: negative): 0 | 0.140798734 | FEC/TX |
| GSM1050640 | 2 | N1 | G1/2 | 58 | positive, 0: negative): 1 | 0.117491102 | FEC/TX |
| GSM1050639 | 2 | N0 | NA | 53 | positive, 0: negative): 0 | 0.008197633 | FEC/TX |
| GSM1050638 | 2 | N1 | G1/2 | 46 | positive, 0: negative): 1 | 0.103678928 | FEC/TX |
| GSM1050637 | 2 | N3 | G3 | 46 | positive, 0: negative): 1 | 0.011390459 | FEC/TX |
| GSM1050636 | 3 | N0 | G3 | 45 | positive, 0: negative): 0 | 0.069688135 | FEC/TX |
| GSM1050635 | 1 | N1 | G1/2 | 42 | positive, 0: negative): 1 | 0.186570873 | FEC/TX |
| GSM1050634 | 3 | N0 | G3 | 48 | positive, 0: negative): 0 | 0.02340255 | FEC/TX |
| GSM1050633 | 2 | N1 | G3 | 47 | positive, 0: negative): 1 | -0.00367199 | FEC/TX |
| GSM1050632 | 3 | N0 | NA | 34.075 | positive, 0: negative): 0 | 0.07717874 | FEC/TX |
| GSM105063 | 2 | N1 | G3 | 33 | positive, 0: negative): 1 | 0.015596054 | FEC/TX |
| GSM1050630 | 3 | N0 | NA | 50 | positive, 0: negative): 0 | -0.004027099 | FEC/TX |
| GSM1050629 | 3 | N0 | G1/2 | 38 | positive, 0: negative): 0 | 0.080284417 | FEC/TX |
| GSM1050628 | 3 | N0 | G1/2 | 52 | positive, 0: negative): 0 | 0.124908016 | FEC/TX |
| GSM1050627 | 4 | N2 | G3 | 40 | positive, 0: negative): 1 | 0.044589525 | FEC/TX |
| GSM1050626 | 2 | N0 | G3 | 49 | positive, 0: negative): 0 | 0.00912053 | FEC/TX |
| GSM1050625 | 3 | N0 | G3 | 47 | positive, 0: negative): 0 | 0.051303682 | FEC/TX |
| GSM1050624 | 3 | N1 | G3 | 56 | positive, 0: negative): 1 | 0.149580806 | FEC/TX |
| GSM1050623 | 3 | N1 | G3 | 67 | positive, 0: negative): 1 | 0.043743951 | FEC/TX |
| GSM1050622 | 2 | N1 | G1/2 | 50 | positive, 0: negative): 1 | 0.051649704 | FEC/TX |
| GSM105062 | 3 | N3 | G3 | 33 | positive, 0: negative): 1 | 0.058890402 | FEC/TX |
| GSM1050620 | 3 | N1 | G3 | 44 | positive, 0: negative): 1 | 0.02660372 | FEC/TX |
| GSM1050619 | 3 | N1 | G3 | 53 | positive, 0: negative): 1 | 0.125219486 | FEC/TX |
| GSM1050618 | 3 | N0 | G1/2 | 69 | positive, 0: negative): 0 | 0.123910251 | FEC/TX |
| GSM1050617 | 2 | N3 | G3 | 41 | positive, 0: negative): 1 | 0.060877273 | FEC/TX |
| GSM1050616 | 2 | N1 | G3 | 62 | positive, 0: negative): 1 | -0.001775766 | FEC/TX |
| GSM1050615 | 4 | N1 | G1/2 | 59 | positive, 0: negative): 1 | 0.132241862 | FEC/TX |
| GSM1050614 | 3 | N1 | G3 | 55 | positive, 0: negative): 1 | 0.111018147 | FEC/TX |
| GSM1050613 | 3 | N1 | G3 | 43 | positive, 0: negative): 1 | 0.083051545 | FEC/TX |
| GSM1050612 | 2 | N2 | G3 | 44 | positive, 0: negative): 1 | 0.096632815 | FEC/TX |
| GSM10506 | 3 | N0 | G1/2 | 49 | positive, 0: negative): 0 | 0.093938071 | FEC/TX |
| GSM1050610 | 2 | N1 | G3 | 50 | positive, 0: negative): 1 | 0.093262746 | FEC/TX |
| GSM1050609 | 3 | N1 | NA | 26 | positive, 0: negative): 1 | 0.148186949 | FEC/TX |
| GSM1050608 | 4 | N1 | G3 | 67 | positive, 0: negative): 1 | 0.193094292 | FEC/TX |
| GSM1050607 | 3 | N1 | G3 | 45.109 | positive, 0: negative): 1 | 0.217648382 | FEC/TX |
| GSM1050606 | 3 | N1 | G1/2 | 56 | positive, 0: negative): 1 | 0.114006011 | FEC/TX |
| GSM1050605 | 2 | N1 | NA | 60.86 | positive, 0: negative): 1 | 0.10714986 | FEC/TX |
| GSM1050604 | 2 | N1 | NA | 37.673 | positive, 0: negative): 1 | 0.119559493 | FEC/TX |
| GSM1050603 | 3 | N1 | G3 | 41.273 | positive, 0: negative): 1 | 0.065125577 | FEC/TX |
| GSM1050602 | 3 | N2 | G3 | 65.314 | positive, 0: negative): 1 | 0.090945381 | FEC/TX |
| GSM105060 | 3 | N0 | G3 | 60 | positive, 0: negative): 0 | 0.160925042 | FEC/TX |
| GSM1050600 | 3 | N2 | G1/2 | 63 | positive, 0: negative): 1 | 0.146523974 | FEC/TX |
| GSM1050599 | 2 | N1 | G3 | 58 | positive, 0: negative): 1 | 0.164402041 | FEC/TX |
| GSM1050598 | 4 | N1 | G3 | 51 | positive, 0: negative): 1 | 0.046662732 | FEC/TX |
| GSM1050597 | 2 | N0 | G3 | 45 | positive, 0: negative): 0 | 0.192550023 | FEC/TX |
| GSM1050596 | 3 | N0 | G3 | 59.231 | positive, 0: negative): 0 | 0.156918904 | FEC/TX |
| GSM1050595 | 3 | N0 | G1/2 | 51.461 | positive, 0: negative): 0 | 0.201080888 | FEC/TX |
| GSM1050594 | 3 | N1 | G3 | 46.943 | positive, 0: negative): 1 | 0.150905378 | FEC/TX |
| GSM1050593 | 3 | N1 | NA | 50.064 | positive, 0: negative): 1 | 0.083467842 | FEC/TX |
| GSM1050592 | 3 | N0 | NA | 53.988 | positive, 0: negative): 0 | 0.166738065 | FEC/TX |
| GSM105059 | 3 | N1 | G1/2 | 65.054 | positive, 0: negative): 1 | 0.112923899 | FEC/TX |
| GSM1050590 | 3 | N0 | G3 | 49.01 | positive, 0: negative): 0 | 0.07266014 | FEC/TX |
| GSM1050589 | 2 | NA | G3 | 40.337 | positive, 0: negative): NA | 0.118999655 | FEC/TX |
| GSM1050588 | 3 | N1 | NA | 43.028 | positive, 0: negative): 1 | 0.078894258 | FEC/TX |
| GSM1050587 | 2 | N1 | G3 | 57.536 | positive, 0: negative): 1 | 0.109422253 | FEC/TX |
| GSM1050586 | 3 | N0 | NA | 34.059 | positive, 0: negative): 0 | 0.172098903 | FEC/TX |
| GSM1050585 | 3 | N1 | G1/2 | 47 | positive, 0: negative): 1 | 0.13933057 | FEC/TX |
| GSM1050584 | 3 | N1 | G3 | 51 | positive, 0: negative): 1 | 0.218124668 | FEC/TX |
| GSM1050583 | 3 | N0 | G3 | 49.758 | positive, 0: negative): 0 | 0.170856999 | FEC/TX |
| GSM1050582 | 3 | N3 | G3 | 44 | positive, 0: negative): 1 | 0.197368304 | FEC/TX |
| GSM105058 | 4 | N1 | G3 | 44 | positive, 0: negative): 1 | 0.19922513 | FEC/TX |
| GSM1050580 | 2 | N0 | NA | 47.099 | positive, 0: negative): 0 | 0.172906955 | FEC/TX |
| GSM1050579 | 2 | N1 | G3 | 36.739 | positive, 0: negative): 1 | 0.197031521 | FEC/TX |
| GSM1050578 | 2 | N1 | G3 | 42 | positive, 0: negative): 1 | 0.087161695 | FEC/TX |
| GSM1050577 | 2 | N0 | G3 | 32.197 | positive, 0: negative): 0 | 0.155014032 | FEC/TX |