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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">7089</item><item key="factors"><item><item key="GSM1045422"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045422"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045424"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045424"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045426"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045426"><item key="CULTURE CONDITIONS">2i</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045428"><item key="CULTURE CONDITIONS">not specified</item><item key="CELL TYPE">epiblast like cells (EpiLCs)</item><item key="VARIATION">Blimp1-mVenus, Stella-ECFP(BVSC) transgene</item></item></item><item><item key="GSM1045428"><item key="CULTURE CONDITIONS">not specified</item><item key="CELL TYPE">epiblast like cells (EpiLCs)</item><item key="VARIATION">Blimp1-mVenus, Stella-ECFP(BVSC) transgene</item></item></item><item><item key="GSM1045428"><item key="CULTURE CONDITIONS">not specified</item><item key="CELL TYPE">epiblast like cells (EpiLCs)</item><item key="VARIATION">Blimp1-mVenus, Stella-ECFP(BVSC) transgene</item></item></item><item><item key="GSM1045428"><item key="CULTURE CONDITIONS">not specified</item><item key="CELL TYPE">epiblast like cells (EpiLCs)</item><item key="VARIATION">Blimp1-mVenus, Stella-ECFP(BVSC) transgene</item></item></item><item><item key="GSM1045432"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045432"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045434"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045434"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045436"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045436"><item key="CULTURE CONDITIONS">Serum without LIF (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045438"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045438"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout, pPyCAG-AGP14 transgene</item></item></item><item><item key="GSM1045440"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045440"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045442"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045442"><item key="CULTURE CONDITIONS">Serum (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045444"><item key="CULTURE CONDITIONS">Serum+MEK inhibitor (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045444"><item key="CULTURE CONDITIONS">Serum+MEK inhibitor (day2)</item><item key="CELL TYPE">ESC-like cells</item><item key="VARIATION">Prdm14 Knockout</item></item></item><item><item key="GSM1045446"><item key="CULTURE CONDITIONS">Serum+MEK inhibitor (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item><item><item key="GSM1045446"><item key="CULTURE CONDITIONS">Serum+MEK inhibitor (day2)</item><item key="CELL TYPE">ESCs</item><item key="VARIATION">No genetic modification</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">Mouse embryonic stem cells (mESCs) fluctuate between a na&#239;ve inner cell mass (ICM)-like state and a primed epiblast-like state of...</item><item key="pubmed_id">23333148</item><item key="geo_gse_id">E-GEOD-42580</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">26</item><item key="tags"><item>cell</item><item>fibroblast</item><item>glycogen</item><item>inner cell mass</item><item>protein</item><item>serum</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">prdm14-ensures-a-naive-pluripotency-by-a-dual-mech</item><item key="geo_id_plat">E-GEOD-42580_A-AFFY-45</item><item key="name">PRDM14 Ensures a Na&#239;ve Pluripotency by a Dual Mechanism Involving Signaling and Epigenetic Pathways in Mouse Embryonic Stem Cells</item><item key="created">Nov.12, 2014</item><item key="summary">Mouse embryonic stem cells (mESCs) fluctuate between a na&#239;ve inner cell mass (ICM)-like state and a primed epiblast-like state of pluripotency in serum, but are harnessed exclusively in a distinctive, apparently more na&#239;ve state of pluripotency (the ground state) with inhibitors for mitogen-activated protein kinase (MAPK) and glycogen synthase kinase 3 pathways (2i).  Understanding the mechanism ensuring a na&#239;ve state of pluripotency would be critical in realizing a full potential of ESCs.  We show here that PRDM14, a PR domain-containing transcriptional regulator, ensures a na&#239;ve pluripotency by a dual mechanism: Antagonizing fibroblast growth factor receptor (FGFR) signaling that is activated paradoxically by the core transcriptional circuitry for pluripotency and directs a primed state and repressing de novo DNA methyltransferases that create a primed epiblast-like epigenome.  PRDM14 exerts these functions by recruiting polycomb repressive complex 2 (PRC2) specifically to key targets and repressing their expression. Mouse Embryonic Stem Cells (mESCs) or mESC-like cells with different Prdm14 genotypes {Prdm14(+/+), Prdm14(-/-), and Prdm14(-/-) rescued with Avitag-EGFP-Prdm14 transgene [Prdm14(-/-)+AGP14]} are cultured on MEF in different medium [2i, Serum(day 2), Serum+MEK inhibitor (PD0325901) (day 2), Serum without LIF (day2)].</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42580</item><item key="species">mouse</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42580/samples/</item></data></biogps>
