Dataset: PRDM14 Ensures a Naïve Pluripotency by a Dual Mechanism Involving Signaling and Epigenetic Pathways in Mouse Embryonic Stem Cells
Mouse embryonic stem cells (mESCs) fluctuate between a naïve inner cell mass (ICM)-like state and a primed epiblast-like state of...
Mouse embryonic stem cells (mESCs) fluctuate between a naïve inner cell mass (ICM)-like state and a primed epiblast-like state of pluripotency in serum, but are harnessed exclusively in a distinctive, apparently more naïve state of pluripotency (the ground state) with inhibitors for mitogen-activated protein kinase (MAPK) and glycogen synthase kinase 3 pathways (2i). Understanding the mechanism ensuring a naïve state of pluripotency would be critical in realizing a full potential of ESCs. We show here that PRDM14, a PR domain-containing transcriptional regulator, ensures a naïve pluripotency by a dual mechanism: Antagonizing fibroblast growth factor receptor (FGFR) signaling that is activated paradoxically by the core transcriptional circuitry for pluripotency and directs a primed state and repressing de novo DNA methyltransferases that create a primed epiblast-like epigenome. PRDM14 exerts these functions by recruiting polycomb repressive complex 2 (PRC2) specifically to key targets and repressing their expression. Mouse Embryonic Stem Cells (mESCs) or mESC-like cells with different Prdm14 genotypes {Prdm14(+/+), Prdm14(-/-), and Prdm14(-/-) rescued with Avitag-EGFP-Prdm14 transgene [Prdm14(-/-)+AGP14]} are cultured on MEF in different medium [2i, Serum(day 2), Serum+MEK inhibitor (PD0325901) (day 2), Serum without LIF (day2)].
- Species:
- mouse
- Samples:
- 26
- Source:
- E-GEOD-42580
- PubMed:
- 23333148
- Updated:
- Dec.12, 2014
- Registered:
- Nov.12, 2014
Sample | CULTURE CONDITIONS | CELL TYPE | VARIATION |
---|---|---|---|
GSM1045422 | 2i | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045422 | 2i | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045424 | 2i | ESC-like cells | Prdm14 Knockout |
GSM1045424 | 2i | ESC-like cells | Prdm14 Knockout |
GSM1045426 | 2i | ESCs | No genetic modification |
GSM1045426 | 2i | ESCs | No genetic modification |
GSM1045428 | not specified | epiblast like cells (EpiLCs) | Blimp1-mVenus, Stella-ECFP(BVSC) transgene |
GSM1045428 | not specified | epiblast like cells (EpiLCs) | Blimp1-mVenus, Stella-ECFP(BVSC) transgene |
GSM1045428 | not specified | epiblast like cells (EpiLCs) | Blimp1-mVenus, Stella-ECFP(BVSC) transgene |
GSM1045428 | not specified | epiblast like cells (EpiLCs) | Blimp1-mVenus, Stella-ECFP(BVSC) transgene |
GSM1045432 | Serum without LIF (day2) | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045432 | Serum without LIF (day2) | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045434 | Serum without LIF (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045434 | Serum without LIF (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045436 | Serum without LIF (day2) | ESCs | No genetic modification |
GSM1045436 | Serum without LIF (day2) | ESCs | No genetic modification |
GSM1045438 | Serum (day2) | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045438 | Serum (day2) | ESC-like cells | Prdm14 Knockout, pPyCAG-AGP14 transgene |
GSM1045440 | Serum (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045440 | Serum (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045442 | Serum (day2) | ESCs | No genetic modification |
GSM1045442 | Serum (day2) | ESCs | No genetic modification |
GSM1045444 | Serum+MEK inhibitor (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045444 | Serum+MEK inhibitor (day2) | ESC-like cells | Prdm14 Knockout |
GSM1045446 | Serum+MEK inhibitor (day2) | ESCs | No genetic modification |
GSM1045446 | Serum+MEK inhibitor (day2) | ESCs | No genetic modification |