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Home › Dataset Library › Expression data from NcGFP ki/+, NcGFP ki/ki and wt (W4) ES cells

Dataset: Expression data from NcGFP ki/+, NcGFP ki/ki and wt (W4) ES cells

We generated a gene replacement allele of the E-cadherin locus that express an N-cadherin-GFP fusion in ES cells. Expression profiles of...

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We generated a gene replacement allele of the E-cadherin locus that express an N-cadherin-GFP fusion in ES cells. Expression profiles of homozygous and heterozygous knock-in ES cells were analyzed in comparison to wt ES cells. The GEO Samples were compared to published data of E-cadherin knock-out ES cells (ArrayExpress, accession number E-MEXP-2836). The comparison data are linked below. RNA was extracted from two independent experiments per genotype, data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.

Species:
mouse

Samples:
6

Source:
E-GEOD-42008

Updated:
Dec.12, 2014

Registered:
Nov.12, 2014


Factors: (via ArrayExpress)
Sample GENOTYPE
GSM1030606 NcGFP ki/+
GSM1030606 NcGFP ki/+
GSM1030608 NcGFP ki/ki
GSM1030608 NcGFP ki/ki
GSM1030610 wild type
GSM1030610 wild type

Tags

  • cadherin
  • e-cadherin
  • n-cadherin

Other Formats

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