{"owner": "ArrayExpress Uploader", "pop_total": 0, "species": "mouse", "factors": [{"GSM1030606": {"GENOTYPE": "NcGFP ki/+"}}, {"GSM1030606": {"GENOTYPE": "NcGFP ki/+"}}, {"GSM1030608": {"GENOTYPE": "NcGFP ki/ki"}}, {"GSM1030608": {"GENOTYPE": "NcGFP ki/ki"}}, {"GSM1030610": {"GENOTYPE": "wild type"}}, {"GSM1030610": {"GENOTYPE": "wild type"}}], "id": 7070, "ownerprofile_id": "arrayexpress_sid", "platform": 6, "summary_wrapped": "We generated a gene replacement allele of the E-cadherin locus that express an N-cadherin-GFP fusion in ES cells. Expression profiles of...", "geo_gse_id": "E-GEOD-42008", "owner_profile": "/profile/8773/arrayexpressuploader", "factor_count": 1, "sample_count": 6, "tags": ["cadherin", "e-cadherin", "n-cadherin"], "lastmodified": "Dec.12, 2014", "is_default": false, "geo_id_plat": "E-GEOD-42008_A-AFFY-45", "slug": "expression-data-from-ncgfp-ki-ncgfp-kiki-and-wt-w4", "geo_gds_id": "", "name": "Expression data from NcGFP ki/+, NcGFP ki/ki and wt (W4) ES cells", "created": "Nov.12, 2014", "summary": "We generated a gene replacement allele of the E-cadherin locus that express an N-cadherin-GFP fusion in ES cells. Expression profiles of homozygous and heterozygous knock-in ES cells were analyzed in comparison to wt ES cells. The GEO Samples were compared to published data of E-cadherin knock-out ES cells (ArrayExpress, accession number E-MEXP-2836). The comparison data are linked below. RNA was extracted from two independent experiments per genotype, data analysis was performed using the R/Bioconductor Limma software. Quality of the data set was controlled by the simpleaffy package and normalized by quantile normalization with the GCRMA alogrithm.", "source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42008", "sample_source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-42008/samples/"}