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In this study, we built on our previous molecular work to identify and...", "pubmed_id": 23319825, "geo_gse_id": "E-GEOD-41613", "owner_profile": "/profile/8773/arrayexpressuploader", "factor_count": 6, "sample_count": 97, "tags": ["carcinoma", "cell", "oral squamous cell carcinoma", "squamous", "squamous cell", "squamous cell carcinoma"], "lastmodified": "Dec.12, 2014", "is_default": false, "geo_gds_id": "", "slug": "a-13-gene-signature-prognostic-of-hpv-negative-osc", "geo_id_plat": "E-GEOD-41613_A-AFFY-44", "name": "A 13-gene signature prognostic of HPV-negative OSCC: discovery and external validation", "created": "Jul.12, 2014", "summary": "OSCC is associated with substantial mortality and morbidity. In this study, we built on our previous molecular work to identify and validate a prognostic 13-gene signature that showed a higher ability than tumor stage in predicting survival for patients with HPV-negative oral squamous cell carcinoma (OSCC). We previously reported 131 genes to be associated with survival in OSCC patients. In this study, we applied L1/L2-penalized Cox regression models to the Affymetrix array data from 97 HPV-negative OSCC patients on the 131 gene to identify a model for prediction of OSCC-specific survival. We then tested the model in an independent dataset and compared to tumor stage.", "source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41613", "species": "human", "sample_source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41613/samples/"}