Dataset: Basal gene expression data of 21 cell lines (18 cancer and 3 non-tumorigenic)
We profiled basal gene expressed levels of 21 cell lines (18 cancer and 3 non-tumorigenic) using Affymetrix HG-U133_plus2 GeneChip...
We profiled basal gene expressed levels of 21 cell lines (18 cancer and 3 non-tumorigenic) using Affymetrix HG-U133_plus2 GeneChip microarrays. Goal of the experiment was to benchmark a number of algorithms for biomarker detection all of which utilize gene expression data. Cell lines were cultivated in appropriate media according to supplier recommendations. Goal was to acquire a basal gene expression profile of 21 common cell lines.
- Species:
- human
- Samples:
- 63
- Source:
- E-GEOD-41445
- Updated:
- Dec.12, 2014
- Registered:
- Sep.19, 2014
Factors:
(via ArrayExpress)
| Sample | ORGAN | DISEASE | CELL LINE | METASTASIS | SITE | NUMBER | GROWTH | MORPHOLOGY | SEX |
|---|---|---|---|---|---|---|---|---|---|
| GSM1017454 | kidney | Renal Cell Adenocarcinoma | 786-O | no | n/a | CRL-1932 | yes | epithelial | male |
| GSM1017454 | kidney | Renal Cell Adenocarcinoma | 786-O | no | n/a | CRL-1932 | yes | epithelial | male |
| GSM1017454 | kidney | Renal Cell Adenocarcinoma | 786-O | no | n/a | CRL-1932 | yes | epithelial | male |
| GSM1017457 | lung | non-small cell carcinoma | A549 | no | n/a | CCL-185 | yes | epithelial | male |
| GSM1017457 | lung | non-small cell carcinoma | A549 | no | n/a | CCL-185 | yes | epithelial | male |
| GSM1017457 | lung | non-small cell carcinoma | A549 | no | n/a | CCL-185 | yes | epithelial | male |
| GSM1017460 | colon | colorectal adenocarcinoma | Caco-2 | no | n/a | HTB-37 | not tested | epithelial | male |
| GSM1017460 | colon | colorectal adenocarcinoma | Caco-2 | no | n/a | HTB-37 | not tested | epithelial | male |
| GSM1017460 | colon | colorectal adenocarcinoma | Caco-2 | no | n/a | HTB-37 | not tested | epithelial | male |
| GSM1017463 | prostate | moderately differentiated adenocarcinoma | DU 145 | yes | brain | HTB-81 | yes | epithelial | male |
| GSM1017463 | prostate | moderately differentiated adenocarcinoma | DU 145 | yes | brain | HTB-81 | yes | epithelial | male |
| GSM1017463 | prostate | moderately differentiated adenocarcinoma | DU 145 | yes | brain | HTB-81 | yes | epithelial | male |
| GSM1017466 | Skin | non-tumorigenic; spontaneously immortilized keratinocytes | HaCaT | no | n/a | n/a (PMID: 2450098) | yes | epithelial | female |
| GSM1017466 | Skin | non-tumorigenic; spontaneously immortilized keratinocytes | HaCaT | no | n/a | n/a (PMID: 2450098) | yes | epithelial | female |
| GSM1017466 | Skin | non-tumorigenic; spontaneously immortilized keratinocytes | HaCaT | no | n/a | n/a (PMID: 2450098) | yes | epithelial | female |
| GSM1017469 | colon | Colorectal Carcinoma | HCT 116 | no | n/a | CCL-247 | yes | epithelial | male |
| GSM1017469 | colon | Colorectal Carcinoma | HCT 116 | no | n/a | CCL-247 | yes | epithelial | male |
| GSM1017469 | colon | Colorectal Carcinoma | HCT 116 | no | n/a | CCL-247 | yes | epithelial | male |
| GSM1017472 | cervix | adenocarcinoma | HeLa | no | n/a | CCL-2 | not tested | epithelial | female |
| GSM1017472 | cervix | adenocarcinoma | HeLa | no | n/a | CCL-2 | not tested | epithelial | female |
| GSM1017472 | cervix | adenocarcinoma | HeLa | no | n/a | CCL-2 | not tested | epithelial | female |
| GSM1017475 | Skin | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | Hs68 | no | n/a | CRL-1635 | not tested | fibroblast | male |
| GSM1017475 | Skin | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | Hs68 | no | n/a | CRL-1635 | not tested | fibroblast | male |
| GSM1017475 | Skin | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | Hs68 | no | n/a | CRL-1635 | not tested | fibroblast | male |
| GSM1017478 | colon | colorectal adenocarcinoma | HT-29 | no | n/a | HTB-38 | yes | epithelial | female |
| GSM1017478 | colon | colorectal adenocarcinoma | HT-29 | no | n/a | HTB-38 | yes | epithelial | female |
| GSM1017478 | colon | colorectal adenocarcinoma | HT-29 | no | n/a | HTB-38 | yes | epithelial | female |
| GSM101748 | Breast | invasive ductal carcinoma; inflammatory skin metastasis | KPL-4 | yes | pleural fluid | n/a (PMID: 10070858) | yes | epithelial | female |
| GSM101748 | Breast | invasive ductal carcinoma; inflammatory skin metastasis | KPL-4 | yes | pleural fluid | n/a (PMID: 10070858) | yes | epithelial | female |
| GSM101748 | Breast | invasive ductal carcinoma; inflammatory skin metastasis | KPL-4 | yes | pleural fluid | n/a (PMID: 10070858) | yes | epithelial | female |
| GSM1017484 | Breast | non-tumorigenic; Fibrocystic Breast disease | MCF 10A | no | n/a | CRL-10317 | not tested | epithelial | female |
| GSM1017484 | Breast | non-tumorigenic; Fibrocystic Breast disease | MCF 10A | no | n/a | CRL-10317 | not tested | epithelial | female |
| GSM1017484 | Breast | non-tumorigenic; Fibrocystic Breast disease | MCF 10A | no | n/a | CRL-10317 | not tested | epithelial | female |
| GSM1017487 | Breast | intraductal adenocarcinoma | MCF7 | yes | pleural fluid | HTB-22 | not tested | epithelial | female |
| GSM1017487 | Breast | intraductal adenocarcinoma | MCF7 | yes | pleural fluid | HTB-22 | not tested | epithelial | female |
| GSM1017487 | Breast | intraductal adenocarcinoma | MCF7 | yes | pleural fluid | HTB-22 | not tested | epithelial | female |
| GSM1017490 | Breast | adenocarcinoma | MDA-MB-231 | yes | pleural fluid | HTB-26 | not tested | epithelial | female |
| GSM1017490 | Breast | adenocarcinoma | MDA-MB-231 | yes | pleural fluid | HTB-26 | not tested | epithelial | female |
| GSM1017490 | Breast | adenocarcinoma | MDA-MB-231 | yes | pleural fluid | HTB-26 | not tested | epithelial | female |
| GSM1017493 | pancreas | carcinoma | MIA Paca-2 | no | n/a | CRL-1420 | yes | attached epithelial with floating rounded cells | female |
| GSM1017493 | pancreas | carcinoma | MIA Paca-2 | no | n/a | CRL-1420 | yes | attached epithelial with floating rounded cells | female |
| GSM1017493 | pancreas | carcinoma | MIA Paca-2 | no | n/a | CRL-1420 | yes | attached epithelial with floating rounded cells | female |
| GSM1017496 | lung | Large Cell Carcinoma | NCI-H460 | yes | pleural fluid | HTB-177 | yes | epithelial | male |
| GSM1017496 | lung | Large Cell Carcinoma | NCI-H460 | yes | pleural fluid | HTB-177 | yes | epithelial | male |
| GSM1017496 | lung | Large Cell Carcinoma | NCI-H460 | yes | pleural fluid | HTB-177 | yes | epithelial | male |
| GSM1017499 | prostate | Gleason Grade 4; adenocarcinoma | PC-3 | yes | bone | CRL-1435 | yes | epithelial | male |
| GSM1017499 | prostate | Gleason Grade 4; adenocarcinoma | PC-3 | yes | bone | CRL-1435 | yes | epithelial | male |
| GSM1017499 | prostate | Gleason Grade 4; adenocarcinoma | PC-3 | yes | bone | CRL-1435 | yes | epithelial | male |
| GSM1017502 | Skin | Malignant Melanoma | SK-MEL-28 | no | n/a | HTB-72 | yes | polygonal | male |
| GSM1017502 | Skin | Malignant Melanoma | SK-MEL-28 | no | n/a | HTB-72 | yes | polygonal | male |
| GSM1017502 | Skin | Malignant Melanoma | SK-MEL-28 | no | n/a | HTB-72 | yes | polygonal | male |
| GSM1017505 | ovary | adenocarcinoma | SK-OV-3 | yes | ascites | HTB-77 | yes | epithelial | female |
| GSM1017505 | ovary | adenocarcinoma | SK-OV-3 | yes | ascites | HTB-77 | yes | epithelial | female |
| GSM1017505 | ovary | adenocarcinoma | SK-OV-3 | yes | ascites | HTB-77 | yes | epithelial | female |
| GSM1017508 | colon | Dukes' type B; colorectal adenocarcinoma | SW480 | no | n/a | CCL-228 | yes | epithelial | female |
| GSM1017508 | colon | Dukes' type B; colorectal adenocarcinoma | SW480 | no | n/a | CCL-228 | yes | epithelial | female |
| GSM1017508 | colon | Dukes' type B; colorectal adenocarcinoma | SW480 | no | n/a | CCL-228 | yes | epithelial | female |
| GSM10175 | Breast | Ductal Carcinoma | T47D | yes | pleural fluid | HTB-133 | yes | epithelial | female |
| GSM10175 | Breast | Ductal Carcinoma | T47D | yes | pleural fluid | HTB-133 | yes | epithelial | female |
| GSM10175 | Breast | Ductal Carcinoma | T47D | yes | pleural fluid | HTB-133 | yes | epithelial | female |
| GSM1017514 | bone | osteosarcoma | U-2 OS | no | n/a | HTB-96 | not tested | epithelial | female |
| GSM1017514 | bone | osteosarcoma | U-2 OS | no | n/a | HTB-96 | not tested | epithelial | female |
| GSM1017514 | bone | osteosarcoma | U-2 OS | no | n/a | HTB-96 | not tested | epithelial | female |